| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,773,162 – 17,773,269 |
| Length | 107 |
| Max. P | 0.984328 |
| Location | 17,773,162 – 17,773,269 |
|---|---|
| Length | 107 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.53795 |
| G+C content | 0.51110 |
| Mean single sequence MFE | -37.93 |
| Consensus MFE | -21.11 |
| Energy contribution | -20.69 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17773162 107 + 24543557 GUUGCAACAA-ACGGCAGCAGCCUGGGCAAACUUUCAAGAAUGCCCUAAUGGCUGCUGUUGAGAGCAAGGAUUUGU---GGUCCGAGUAGCCGGAAACCUGUAAUGAAGAU (((((.....-.(((((((((((.(((((..((....))..)))))....)))))))))))......(((.(((.(---(((.......)))).)))))))))))...... ( -40.50, z-score = -3.25, R) >droSim1.chr3L 17110736 107 + 22553184 GUUGCAACAA-ACGGCAGCAGCCUGGGCAAACUUUCAAGAAUGCCCUAAUGGCUGCUGUUGAGAGCAAGGAUUUGU---GGCCCGGGCAGCCGGAAACCUGUAAUGAAGAU (((((.....-.(((((((((((.(((((..((....))..)))))....)))))))))))......(((.(((.(---(((.......)))).)))))))))))...... ( -42.20, z-score = -2.60, R) >droSec1.super_0 9820235 107 + 21120651 GUUGCAACAA-ACGGCAGCAGCCUGGGCAAACUUUCAAGAAUGCUCUAAUGGCUGCUGUUGAGAGCAAGGAUUUGU---GGCCCGGGCAGCCGGAAACCUGUAAUGAAGAU (((((.....-.(((((((((((.(((((..((....))..)))))....)))))))))))......(((.(((.(---(((.......)))).)))))))))))...... ( -39.20, z-score = -1.91, R) >droYak2.chr3L 7913841 107 - 24197627 GUUGCAACAA-ACGGCAGCAGCCUGGGCAAACUUUCAAGAAUGCCCUAAUGGCUGCUGUUGAAAGCAAGGAUUUGU---GGCCCCAGCAGCCGGAAACCUGUAAUGAAGAA (((((.....-.(((((((((((.(((((..((....))..)))))....)))))))))))......(((.(((.(---(((.......)))).)))))))))))...... ( -42.20, z-score = -3.06, R) >droEre2.scaffold_4784 9674747 107 - 25762168 GUUGCAACAA-ACGGCAGCAGCCUGGGCAAACUUUCAAGAAUGCACUAAUGGCUGCUGUUGAAAGCAAGGAUUUGU---GGCCCGAGCAGCCGGAAACCUGUAAUGAAGAU (((((.....-.(((((((((((((((((..((....))..))).)))..)))))))))))......(((.(((.(---(((.......)))).)))))))))))...... ( -36.80, z-score = -1.87, R) >droAna3.scaffold_13337 14470310 109 + 23293914 -UUGCAACAA-AGGGUUACUGCUUGAGCAAACUUUCAAGAAUCCUUUAAUGGCUGCUUUUGAAGGCAGAGCCAGGCCAGAGUCGGCAGGACAGGAAACCUGUGUUGAAGAU -...(((((.-(((....(((((((((......))))))..((((....(((((((((....))))..))))).(((......))))))))))....))).)))))..... ( -33.80, z-score = -0.99, R) >dp4.chrXR_group6 9566807 102 - 13314419 CUUGCAGCAGCACAGUCGGGGCAAGUUUCAAGCAGAAACAACGCUUUAAGGGCUCCGGCUG---GCCAAGUCUGGU------UGUUACAUCAGCGACCCCGUGAUGAAGAU ((((((((.((.((((((((((..(((((.....)))))....((....))))))))))))---))((....))))------)))..(((((.((....)))))))))).. ( -34.00, z-score = -1.01, R) >droPer1.super_9 1596249 102 - 3637205 GUUGCAGCAGCACAGGCGGGGCAAGUUUCAAGCAGAAACAACGCUUUAAGGGCUCCGGCUG---GCCGAGUCUGGU------UGUUACAUCAGCGACCUCGUGAUGAAGAU .....((((((.((((((((((..(((((.....)))))....((....)))))))((...---.))..)))))))------)))).(((((.((....)))))))..... ( -34.70, z-score = -0.86, R) >consensus GUUGCAACAA_ACGGCAGCAGCCUGGGCAAACUUUCAAGAAUGCUCUAAUGGCUGCUGUUGAAAGCAAGGAUUUGU___GGCCCGAGCAGCCGGAAACCUGUAAUGAAGAU (((((.......(((((((((((.(((((..(......)..)))))....)))))))))))...((((....))))........................)))))...... (-21.11 = -20.69 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:34 2011