| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,687,812 – 17,687,902 |
| Length | 90 |
| Max. P | 0.798922 |
| Location | 17,687,812 – 17,687,902 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Shannon entropy | 0.08136 |
| G+C content | 0.41333 |
| Mean single sequence MFE | -19.34 |
| Consensus MFE | -15.14 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17687812 90 + 24543557 ACAAUUAAAACGCCCCGAAAAAUGGGAAAUAAGAGUGGUUAGUGAGAGAACCCCACUUGAAUGCAGCUAACCAUGAAAGCGCGUUAAAAA ........(((((((((.....))))........(((((((((..(((.......))).......)))))))))......)))))..... ( -20.30, z-score = -2.76, R) >droSim1.chr3L 17027200 90 + 22553184 ACAAUUAAAACGCCCCGAAAAAUGGGAAAUAAGAGUGGUUAGUGAGAGAACCCCACUUGAAUGCAGCUAACCAUGAAAGCGCGUUAAAAA ........(((((((((.....))))........(((((((((..(((.......))).......)))))))))......)))))..... ( -20.30, z-score = -2.76, R) >droSec1.super_0 9734089 90 + 21120651 ACAAUUAAAACGCCCCAAAAAAUGGGAAAUAAGAGUGGUUAGUGAGAGAACCCCACUUGAAUGCAGCUAACCAUGAAAGCGCGUUAAAAA ........(((((((((.....))))........(((((((((..(((.......))).......)))))))))......)))))..... ( -21.50, z-score = -3.24, R) >droYak2.chr3L 7833919 90 - 24197627 ACAAUUAAAACGUCCCGAAAAAUGUGAAAUAAGAGUGGUUAGUGAGAGAAGCCCACUCGAAUGCAGCUAACCAUGAAAGCGCGUUAAAAA ....................((((((........(((((((((..(((.......))).......))))))))).....))))))..... ( -17.42, z-score = -1.96, R) >droEre2.scaffold_4784 9597688 90 - 25762168 ACAAUUAAAACGACCCGAAAAAUGCGAAAUACGAGUGGUUAGUGAGCGAACCCCACUCGAAUGCAGCCAACCAUGAAAGCGCGUUAAAAA ....................((((((.....(((((((...((......)).)))))))....((........))....))))))..... ( -17.20, z-score = -1.52, R) >consensus ACAAUUAAAACGCCCCGAAAAAUGGGAAAUAAGAGUGGUUAGUGAGAGAACCCCACUUGAAUGCAGCUAACCAUGAAAGCGCGUUAAAAA ........(((((((((.....))))........(((((((((..(((.......))).......)))))))))......)))))..... (-15.14 = -15.62 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:24 2011