| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,679,600 – 17,679,695 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 17,679,600 – 17,679,695 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.49 |
| Shannon entropy | 0.52964 |
| G+C content | 0.43637 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -8.62 |
| Energy contribution | -9.84 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 17679600 95 + 24543557 ----------------GUCCCUUUGGGGAGUUUUUCCCUGCUGAUGACACGAAAGAUGUGUCCAAAAUGCGGGCUUCAAUAAUUUGAGGUAAGUUUAUUAUGCAGAUAAAC ----------------.((((....))))........((((((((((((((.....))))))......((..(((((((....)))))))..))..)))).))))...... ( -25.90, z-score = -1.74, R) >droSim1.chr3L 17018638 95 + 22553184 ----------------GUCCCUUUGGGAAGUUUUUCUAUGCUGAUGACACGAAAGACGUGUCCAAAAUGCGGGCUUCAAUAAUUUGAGGUAAGUUUAUUAUGCAGAUAAAC ----------------.((((...)))).((((.(((..((((((((((((.....))))))......((..(((((((....)))))))..))..)))).))))).)))) ( -24.60, z-score = -1.94, R) >droSec1.super_0 9725951 95 + 21120651 ----------------GUUCCUUUGGGAAGUUUUUCUCUGCUGAUGACACGAAAGACGUGUCCAAAAUGCGGGCUUCAAUAAUUUGAGGUAAGUUUAUUAUGCAGAUAAAC ----------------.((((....))))((((...(((((((((((((((.....))))))......((..(((((((....)))))))..))..)))).))))).)))) ( -27.60, z-score = -2.86, R) >droYak2.chr3L 7825290 95 - 24197627 ----------------GUCCCUUUGGGGAGUUUUUGUCUGCUGAUGACACGAACGACGUGUCCAAAAUGCGGGCUUCAAUAAUUUGAGGUAAGUUUAUUAUGCAGAUAAAC ----------------.((((....))))...(((((((((((((((((((.....))))))......((..(((((((....)))))))..))..)))).))))))))). ( -33.60, z-score = -4.24, R) >droEre2.scaffold_4784 9589415 95 - 25762168 ----------------GUCCCUUUGGGGAGUUUUUGUCUGCUGAUGACACGAACGACGUGUCCAAAAUGCGGGCUUCAAUAAUUUGAGGUAAGUUUAUUAUGCAGAUAAAC ----------------.((((....))))...(((((((((((((((((((.....))))))......((..(((((((....)))))))..))..)))).))))))))). ( -33.60, z-score = -4.24, R) >droAna3.scaffold_13337 14383158 109 + 23293914 GGGGCUGGAGGUAGGCUUUCCCAAUGGGGGAAUUCCAU--CUGCUGACGACACGAACGUGUCCAAAAUGCGGGCUUCUAUAAUUUGAGGUGAGUUUAUUAUGCAGAUAAAC .....(((((((.((..(((((.....)))))..))..--((((....(((((....)))))......)))))))))))..(((((..((((.....)))).))))).... ( -31.00, z-score = -0.80, R) >dp4.chrXR_group6 9482901 93 - 13314419 ----------------GUCCCUUUGGGGGGCAUUUCAC--CUGGCGACGACAGGAACGUGUCCAAAAUGCGGGCUCCAAUAAUUUGAGGUGAGUUUAUUAUGCAGAUAAAC ----------------(((((.....)))))...((((--(((....)....(((....((((.......))))))).........))))))(((((((.....))))))) ( -26.30, z-score = -0.72, R) >droPer1.super_9 1512442 93 - 3637205 ----------------GUCCCUUUGGGGGGCAUUUCAC--CUGGCGACGACAGGAACGUGUCCAAAAUGCGGGCUCCAAUAAUUUGAGGUGAGUUUAUUAUGCAGAUAAAC ----------------(((((.....)))))...((((--(((....)....(((....((((.......))))))).........))))))(((((((.....))))))) ( -26.30, z-score = -0.72, R) >droWil1.scaffold_181017 561198 80 - 939937 -----------------------------GUCUGCUGCUGCUGUUGACGUU--GAACGUGUCCAAAAUGCGGGCCUCAAUAAUUUGAGGUGAGUUUAUUAUGCAGAUAAAC -----------------------------((((((..((((..((((((..--...)))...)))...))))(((((((....)))))))...........)))))).... ( -25.00, z-score = -2.86, R) >droVir3.scaffold_13049 18480342 96 - 25233164 -------------GUCCCUUUUGCCAUUAGCCAUUUAC--CUGCUGCUGAUGUAGACGUGCCCAAAAUGCGGGCAUCAAUAAUUUUGGCACUGUUUAUUAUGCAGAUACAC -------------........(((((............--...((((....))))..((((((.......)))))).........)))))((((.......))))...... ( -22.30, z-score = -0.47, R) >droMoj3.scaffold_6680 19679299 78 - 24764193 -----------------------------GCUGUU-GC--CU-CUGCUGACGUGAACGUGCCCGAAAUGCGGGCAUCAAUAAUUUUAGCACUGUUUAUUAUGCAGAUAAAC -----------------------------((....-))--..-.((((((.((....(((((((.....))))))).....)).))))))((((.......))))...... ( -21.90, z-score = -1.89, R) >consensus ________________GUCCCUUUGGGGAGUUUUUCACUGCUGAUGACGAGAAGGACGUGUCCAAAAUGCGGGCUUCAAUAAUUUGAGGUAAGUUUAUUAUGCAGAUAAAC .................((((....))))...........................(((((.....))))).(((((((....)))))))..(((((((.....))))))) ( -8.62 = -9.84 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:23 2011