| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,673,516 – 17,673,606 |
| Length | 90 |
| Max. P | 0.873145 |
| Location | 17,673,516 – 17,673,606 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 68.82 |
| Shannon entropy | 0.54177 |
| G+C content | 0.39194 |
| Mean single sequence MFE | -15.44 |
| Consensus MFE | -8.18 |
| Energy contribution | -7.84 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17673516 90 + 24543557 UUACCGCUAGAGGGUAUCCUUUAGCUUUAAAUUCUCAAAAGCUACCUCCAUCAAUUUGUUUUCCA---UAUUCCCUUAGGCGACUUCCCUUUC----------------------- ....((((.(((((.......(((((((.........)))))))....((......)).......---....))))).))))...........----------------------- ( -17.40, z-score = -2.42, R) >droPer1.super_9 1506406 116 - 3637205 UUUCUCCUUUAAGUUAUCCUUUUCACUUCAAUUCCUUCAAUUCGUUUGCUACAGGGUAUUCGCAGGUCUACUAAUUUUCGCCGUUUAUUGUACAUUGUCAUAGUAUUCUCCCCUUU ...........................................(..((((((((.((((.....(((............))).......)))).))))...))))..)........ ( -8.20, z-score = 0.89, R) >droAna3.scaffold_13337 14374875 89 + 23293914 -UUCUAUUCAAGGGUAUAUUUUGGUUUAAAAUUUGUGUGAGUUUCCUUCAUCAAUUUGUUAUCCA---UAUUCCUUCCAAGGACUUGCCUCUC----------------------- -..........(((((.....(((....(((((.(((.(((....)))))).))))).....)))---...((((....))))..)))))...----------------------- ( -13.20, z-score = -0.27, R) >droEre2.scaffold_4784 9583296 90 - 25762168 UUACCGCUAGAGGGUAUCCUUUAGCUUUAAAUUCCCAAAAGCUACCUCCAUCAAUUUGUUUUCCA---UACGCCCUUAGGCGACUUCCCUUUC----------------------- ....((((.((((((......(((((((.........))))))).............((......---.)))))))).))))...........----------------------- ( -19.80, z-score = -3.05, R) >droYak2.chr3L 7819025 90 - 24197627 UAAGCGCUACAGGGUAUCCUUUAGCUUUAAAUUCUCAAAAGCUACCUCCAUCAAUUUGUUUUCCA---UACUCCCUUAGGCGACUUCCCUUUC----------------------- .(((((((..((((.......(((((((.........)))))))....((......)).......---....))))..)))).))).......----------------------- ( -15.40, z-score = -1.73, R) >droSec1.super_0 9719760 90 + 21120651 UUACUGCUAGAGGGUAUUCUUUAGCUUUAAAUUCUCAAAAGCUACCUCCAUCAAUUUGUUUGCCA---UAUUCCCUUAGGCGACUUCCCUUUC----------------------- ........((((((...((..(((((((.........))))))).................(((.---((......)))))))...)))))).----------------------- ( -16.40, z-score = -1.34, R) >droSim1.chr3L 17012498 90 + 22553184 UUACCGCUAGAGGGUAUCCUUUAGCUUUAAAUUCUCAAAAGCUACCUCCAUCAAUUUGUUUGCCA---UAUUCCCUUAGGCGACUUCCCUUUC----------------------- ....((((.(((((.......(((((((.........))))))).......(((.....)))...---....))))).))))...........----------------------- ( -17.70, z-score = -2.03, R) >consensus UUACCGCUAGAGGGUAUCCUUUAGCUUUAAAUUCUCAAAAGCUACCUCCAUCAAUUUGUUUUCCA___UAUUCCCUUAGGCGACUUCCCUUUC_______________________ ....((((..((((.......(((((((.........)))))))....((......))..............))))..)))).................................. ( -8.18 = -7.84 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:20 2011