| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,668,015 – 17,668,111 |
| Length | 96 |
| Max. P | 0.534787 |
| Location | 17,668,015 – 17,668,111 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 73.58 |
| Shannon entropy | 0.47298 |
| G+C content | 0.57460 |
| Mean single sequence MFE | -28.84 |
| Consensus MFE | -15.28 |
| Energy contribution | -14.96 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17668015 96 - 24543557 ACGCUUGCUGCAACGGAAACGCUUCAGGCGGUAACUAUUUGCUGGGG--GCGGCAAGGAAUUGAGGAUGCGGACCAGUAAUGGGGGCUAUGGGAGAAC- ...((((((((..((....))((((((.(((.......)))))))))--))))))))...........((...(((....)))..))...........- ( -29.40, z-score = -1.82, R) >droSim1.chr3L 17006614 96 - 22553184 ACGCUGGUUGCAACGGAAACGCUUCAGGCGGUAACUAUUUGCUGGGG--GCGGCAAGGAAUUGAGGAUGCGGGCCAGUAAUGGGGGCUAUGGGAGAAC- ..((((((((((.((....))((((((..........(((((((...--.)))))))...)))))).))).)))))))....................- ( -26.12, z-score = -0.52, R) >droYak2.chr3L 7811894 96 + 24197627 ACGCUUGCUGCAACGGAAACGCUGCAGGCGGCAACUAUUUGCUGGGG--GCGGCAAGGAGCAUGGAAUGGGGAGCAGUAAU-GGGGCUGUGGGAGAACU ..((((.(((((.((....)).)))))((.((..(((.....)))..--)).))...))))............(((((...-...)))))......... ( -31.30, z-score = -1.39, R) >droEre2.scaffold_4784 9577623 95 + 25762168 ACGCUUGCUGCAACGGAAACGCUCCAGGCGGCAACUAUUUGCUGGGG--GCGGCAAGGAAUAUGGGAUGCGGACCAGUAAU-GGGGCUGUGGGAGAAC- ...((((((((..((....))((((((.(((.......)))))))))--))))))))...........((((.(((....)-))..))))........- ( -33.90, z-score = -2.26, R) >droAna3.scaffold_13337 14369907 92 - 23293914 ACGCCCGCUGCAACGGAAAUGGCAAGGAUGCAGGCCAGCGGUUAAGGAUAUGACAAGGAUCCAGG---GUGGAUCGAGGAC---GAUGAGGAGAGAAU- .((((((((((...((.....(((....)))...)).)))))...((((.........)))).))---))).((((....)---)))...........- ( -23.50, z-score = -0.58, R) >consensus ACGCUUGCUGCAACGGAAACGCUUCAGGCGGCAACUAUUUGCUGGGG__GCGGCAAGGAAUAGGGGAUGCGGACCAGUAAU_GGGGCUAUGGGAGAAC_ .((((((((((..((....))......)))))))...(((((((......)))))))...........)))............................ (-15.28 = -14.96 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:18 2011