| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,666,261 – 17,666,320 |
| Length | 59 |
| Max. P | 0.792614 |
| Location | 17,666,261 – 17,666,320 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 74.32 |
| Shannon entropy | 0.48536 |
| G+C content | 0.48559 |
| Mean single sequence MFE | -15.25 |
| Consensus MFE | -10.60 |
| Energy contribution | -9.60 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17666261 59 + 24543557 CAACUAUGGCACCCAAUCUAUGCUGGUUGUCACUCUCGUCUUAGAGAAAGUGGGGUCAA------ ......((((.(((((((......))))).(((((((......))))..))))))))).------ ( -15.20, z-score = -1.00, R) >droAna3.scaffold_13337 14368187 59 + 23293914 -AAGCUCGGCAAGCAAUCUAUGCUGCCUGUCAGUCUUGUGGGAAGUGAGUUUGAGUUCAA----- -.(((((((((.(((.....)))))))..(((.(((....)))..)))....)))))...----- ( -15.60, z-score = -0.43, R) >droYak2.chr3L 7809952 53 - 24197627 CAACUAUGGCACCCAAUCUAUGCUGGUUGUCAGUCUCGUCUCAGAGAAAGUCG------------ ..(((.(((((.(((........))).))))).((((......)))).)))..------------ ( -12.30, z-score = -1.43, R) >droEre2.scaffold_4784 9575775 65 - 25762168 CAACUAUGGCACCCAAUCUAUGCUGCCUGUCUGUCUCGUUUCUGAGAAAGUGGAGAGUGGGUCAG ........(.(((((.(((.((((.........(((((....))))).)))).))).)))))).. ( -14.90, z-score = 0.37, R) >droSec1.super_0 9712466 59 + 21120651 CAACUAUGGCACCCAAUCUAUGCUGGUUGUCAGUCUCGUCUUAGAGAAAGUGGGGUCAG------ ......((((.((((.......(((.....)))((((......))))...)))))))).------ ( -15.60, z-score = -1.07, R) >droSim1.chr3L 17004807 59 + 22553184 CAACUAUGGCAGCCAAUCUAUGCUGGUUGUCAGUCUCGUCUUAGAGAAAGUAGGGUCAG------ ...((((((((((((........))))))))..((((......))))..))))......------ ( -17.90, z-score = -2.41, R) >consensus CAACUAUGGCACCCAAUCUAUGCUGGUUGUCAGUCUCGUCUUAGAGAAAGUGGGGUCAG______ ..(((..((((.(((........))).))))..((((......)))).))).............. (-10.60 = -9.60 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:15 2011