| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,645,479 – 17,645,545 |
| Length | 66 |
| Max. P | 0.936172 |
| Location | 17,645,479 – 17,645,545 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 72.75 |
| Shannon entropy | 0.50161 |
| G+C content | 0.44705 |
| Mean single sequence MFE | -14.39 |
| Consensus MFE | -6.46 |
| Energy contribution | -6.21 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17645479 66 - 24543557 UUACUGCCUAGCAUCCACUUGCUU----UCCGCACCUGUGGAUGGUAUUUGU-CACCUUAUCAAUACGGUU----- .....(((...(((((((.(((..----...)))...)))))))(((((.((-......)).)))))))).----- ( -17.30, z-score = -2.43, R) >droPer1.super_9 1476627 69 + 3637205 UUAC--CCUAGCAUCCACACAUAUGAAAUCCACACUUGUGGAAGCCAUUCGCCCACUUUAUCAAUACCGUU----- ....--....((.((((((....((.....))....)))))).))..........................----- ( -9.70, z-score = -1.97, R) >dp4.chrXR_group6 9445282 69 + 13314419 UUAC--CCUAGCAUCCACACAUAUGAAAUCCACACUUGUGGAAGCCAUUCGCGCACUUUAUCAAUACCGUU----- ....--....((.((((((....((.....))....)))))).((.....)))).................----- ( -10.30, z-score = -1.61, R) >droAna3.scaffold_13337 14346800 59 - 23293914 UUAC--ACUGGCA---AUACGG------UCCACACUUGUGGAUCGCAUUCGG-CACCUUAUCUUUCUGCAC----- ....--....(((---....((------(((((....)))))))((.....)-)............)))..----- ( -15.30, z-score = -2.90, R) >droEre2.scaffold_4784 9554949 71 + 25762168 UUACUACUUAGCAUCCACUAGCGU----UCCGCACAUGUGGAUGGUAUUCGU-CACCUUAUCAAUACUGUUUGCUU .........(((((((((..(((.----..)))....))))))((((((.((-......)).))))))....))). ( -14.10, z-score = -1.22, R) >droYak2.chr3L 7789231 71 + 24197627 UUACUGCCUAGCAUCCACUUACUU----UCCGCACCUGUGGAUGGUAUUCGU-CACCUUAUCAAUACUGUUAGGUU .....(((((((((((((......----.........))))))((((((.((-......)).))))))))))))). ( -18.16, z-score = -2.66, R) >droSec1.super_0 9691661 66 - 21120651 UUACUGCCUAGCAUCCACAUGCUU----UCCGCACCUGUGGAUGGUAUUCGU-CACCUUAUCAAUACGAUU----- ........((.(((((((((((..----...)))..)))))))).)).((((-............))))..----- ( -15.90, z-score = -2.44, R) >consensus UUACU_CCUAGCAUCCACACGCUU____UCCGCACCUGUGGAUGGUAUUCGU_CACCUUAUCAAUACGGUU_____ ............................(((((....))))).................................. ( -6.46 = -6.21 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:13 2011