| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,625,621 – 17,625,719 |
| Length | 98 |
| Max. P | 0.646940 |
| Location | 17,625,621 – 17,625,719 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.96 |
| Shannon entropy | 0.40800 |
| G+C content | 0.28655 |
| Mean single sequence MFE | -20.27 |
| Consensus MFE | -7.60 |
| Energy contribution | -8.97 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17625621 98 + 24543557 AUACUAAGAAGAUAAGAAUAAGAAAAGGUGCAACUGCAACGCUUAG-UAACUGCAAAUUUAAUUUUUAUCUUUCGUAAUGCAUUCUGUUGAAAACAAAU .(((...((((((((((((....(((..((((..(((........)-))..))))..))).)))))))))))).))).((..(((....)))..))... ( -16.40, z-score = -0.63, R) >droYak2.chr3L 7767669 82 - 24197627 AUACUCAGAAGAUAAGAAUAGGAAAAGGUGCAACUGCA----UUAG-UCA------------UUUUUAUCUUUUGAAAUGCAUUGAUUUGAAAACCAAU ....(((((((((((((((.((....(((((....)))----))..-)))------------))))))))))))))....................... ( -19.50, z-score = -2.85, R) >droEre2.scaffold_4784 9533486 96 - 25762168 AUACUAAGAAGAUAAAAAUGAGAAAAGGUGCAACUGCAUUAGUCAACUGACGGUAGAUUUCAUUUUUAUCUUUU---UUUUAUUGCUUUGAAAACAAAC (((..((((((((((((((((((...(((((....))))).(((....)))......)))))))))))))))))---)..)))................ ( -24.90, z-score = -4.00, R) >consensus AUACUAAGAAGAUAAGAAUAAGAAAAGGUGCAACUGCA____UUAG_UAAC_G_A_AUUU_AUUUUUAUCUUUUG_AAUGCAUUGAUUUGAAAACAAAU ......(((((((((((((.........(((....))).(((((....)))))........)))))))))))))......................... ( -7.60 = -8.97 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:09 2011