| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,618,049 – 17,618,113 |
| Length | 64 |
| Max. P | 0.783320 |
| Location | 17,618,049 – 17,618,113 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.39051 |
| G+C content | 0.34585 |
| Mean single sequence MFE | -12.78 |
| Consensus MFE | -10.16 |
| Energy contribution | -9.84 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17618049 64 + 24543557 UAUUA-AUAAUAUAAUGAACUUGCACUUUGUUU-GGGCACGUAA-GAUGAAUAUUUGCGUGCCGAUC------ .....-..........((((.........))))-.(((((((((-(.......))))))))))....------ ( -14.40, z-score = -1.95, R) >droSim1.chr3L 16957410 64 + 22553184 UAUUA-AUAAAUUAAUGAACUUGCACUUUGUUU-GGGCACGUAA-GAUGAAUAUUUGCGUGCCAAUC------ .....-..........((((.........))))-.(((((((((-(.......))))))))))....------ ( -14.40, z-score = -2.10, R) >droSec1.super_0 9664434 64 + 21120651 UAUUA-AUAAAUUAAUGAACUUGCACUUUGUUU-GGGCACGUAA-GAUGAAUAUUUGCGUGCCGAUC------ .....-..........((((.........))))-.(((((((((-(.......))))))))))....------ ( -14.40, z-score = -2.04, R) >droYak2.chr3L 7760109 64 - 24197627 UAUUA-UAAAAUUAAUGAACUUGCACUUUGUUU-GCGCACGUAA-GAUGAAUAUUUGCGUGCCGAUC------ (((((-......))))).....(((.......)-))((((((((-(.......))))))))).....------ ( -11.90, z-score = -0.86, R) >droAna3.scaffold_13337 14320260 73 + 23293914 UGCGACAGAAUUUCAUGAAUUUAAGUUCCGAUCAGAGCACGUAGUGGGGAUUAUUAGUGUGUUAAUUGAAAAC ..........(((((.((((....)))).......(((((((((((.....))))).))))))...))))).. ( -8.80, z-score = 1.27, R) >consensus UAUUA_AUAAAUUAAUGAACUUGCACUUUGUUU_GGGCACGUAA_GAUGAAUAUUUGCGUGCCGAUC______ ...................................(((((((((..........))))))))).......... (-10.16 = -9.84 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:06 2011