| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,599,006 – 17,599,105 |
| Length | 99 |
| Max. P | 0.901229 |
| Location | 17,599,006 – 17,599,105 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 89.34 |
| Shannon entropy | 0.18909 |
| G+C content | 0.40832 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -22.22 |
| Energy contribution | -21.76 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17599006 99 - 24543557 ----------GCAUAAUGGCUGUGUCUCGUGUGUCUGCUAUUUCUUGAUCGCACUUUUUAUGGCGGUGGCAGAAUAAUUUUUCCAUUUAACAUUUUUCUGCUGCUGUUG ----------(((((.....)))))...(((((((...........)).))))).......(((((..((((((.(((.((.......)).))).))))))..))))). ( -24.20, z-score = -1.90, R) >droPer1.super_9 557521 99 - 3637205 ----------GCAUAAUGGAUGUGUCUCGUGUGUCUGCCAUUUCUUGAUCGCACUUUUUAUGGCAGCUACAGAAUAAUUUUUCCAUUCAACAUGUUUUCGUCGCUGCCG ----------(((((.....)))))...(((((((...........)).))))).......((((((.((((((((................)))))).)).)))))). ( -21.09, z-score = -0.72, R) >dp4.chrXR_group6 2266720 99 - 13314419 ----------GCAUAAUGGAUGUGUCUCGUGUGUCUGCCAUUUCUUGAUCGCACUUUUUAUGGCAGCUACAGAAUAAUUUUUCCAUUCAACAUGUUUUCGUCGCUGCCG ----------(((((.....)))))...(((((((...........)).))))).......((((((.((((((((................)))))).)).)))))). ( -21.09, z-score = -0.72, R) >droEre2.scaffold_4784 9507078 99 + 25762168 ----------GCAUAAUGGCUGUGUCUCGUGUAUCUGCCAUUUCUUGAUCGCACUUUUUAUGGCGAUGGCAGAAUAUUUUUUCCAUUUAACAUUUUUCUGCUGCUGUUG ----------((..((((((.(...(....)...).)))))).....(((((.(.......))))))(((((((.....................)))))))))..... ( -20.00, z-score = -0.48, R) >droYak2.chr3L 7740164 109 + 24197627 UAUCCAUUAUGCAUAAUGGCGGUGUCUCGUGUGUCUGCUAUUUCUUGAUCGCACUUUUUAUGGCGGUGGCAGAAUAAUUUUUCCAUUUAACAUUUUUCUGCUGCUGCUG ...((((((....)))))).........(((((((...........)).))))).......(((((..((((((.(((.((.......)).))).))))))..))))). ( -29.10, z-score = -2.45, R) >droSec1.super_0 9645291 99 - 21120651 ----------GCAUAAUGGCUGUGUCUCGUGUGUCUGCUAUUUCUUGAUCGCACUUUUUAUGGCGGUGGCAGAAUAAUUUUUCCAUUUAACAUUUUUCUGCUGCUGUUG ----------(((((.....)))))...(((((((...........)).))))).......(((((..((((((.(((.((.......)).))).))))))..))))). ( -24.20, z-score = -1.90, R) >droSim1.chr3L 16937640 99 - 22553184 ----------GCAUAAUGGCUGUGUCUCGUGUGUCUGCUAUUUCUUGAUCGCACUUUUUAUGGCGGUGGCAGAAUAAUUUUUCCAUUUAACAUUUUUCUGCUGCUGUUG ----------(((((.....)))))...(((((((...........)).))))).......(((((..((((((.(((.((.......)).))).))))))..))))). ( -24.20, z-score = -1.90, R) >consensus __________GCAUAAUGGCUGUGUCUCGUGUGUCUGCUAUUUCUUGAUCGCACUUUUUAUGGCGGUGGCAGAAUAAUUUUUCCAUUUAACAUUUUUCUGCUGCUGUUG ..........(((((.....)))))...(((((((...........)).))))).......(((((((((((((.....................))))))))))))). (-22.22 = -21.76 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:05 2011