| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,525,633 – 17,525,699 |
| Length | 66 |
| Max. P | 0.962201 |
| Location | 17,525,633 – 17,525,699 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 65.39 |
| Shannon entropy | 0.71469 |
| G+C content | 0.44862 |
| Mean single sequence MFE | -16.94 |
| Consensus MFE | -8.21 |
| Energy contribution | -10.56 |
| Covariance contribution | 2.35 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.962201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17525633 66 + 24543557 GCGAUUAUUUGACGGCACUUCAAUUCUGUUUGUCGAACUCAUUGAAGCGUUGUCAGAAUGGCUCGA ((.((..(((((((((.(((((((...((((...))))..))))))).))))))))))).)).... ( -21.70, z-score = -2.63, R) >droAna3.scaffold_13337 14226903 54 + 23293914 -----------GCGGCGGCUGAAUGUUGUUUGGCUAACUCAUUUAGGCACUGCCAGAAUUUGAGG- -----------((((.(.(((((((..(((.....))).))))))).).))))............- ( -15.80, z-score = -1.21, R) >droEre2.scaffold_4784 9433146 66 - 25762168 GCGAUAAUUUGACGGCACUCCAAUUCAGUUUGUCUAGCUCAUUGAAGCGUUGUCAGAAAUGUUCGG .(((...(((((((((.((.((((..((((.....)))).)))).)).))))))))).....))). ( -17.80, z-score = -1.77, R) >droYak2.chr3L 7650352 65 - 24197627 -CAAUAAUUUAACGGCACUCGAAUUCUGUUUACCCAGCUCAUUGACGCGUUGUCAGAAAUGUUCGA -.................((((((((((......((((.(......).)))).))))...)))))) ( -8.80, z-score = 0.73, R) >droSim1.chr3L 16857678 66 + 22553184 GCGAGAAUUUGACGGCACUUCAAUUCUGUUUGUCGAGCUCAUUGAAGCGUGGUCAGAAAGGCUCGA .((((..((((((.((.(((((((...((((...))))..))))))).)).))))))....)))). ( -23.50, z-score = -2.10, R) >droSec1.super_0 9570355 66 + 21120651 GCGAUAAUUUGACGGCACUUCAAUUCUGUUUGUCGAGCUCAUUGAAGCGUUGUCAGAAAGGCUCGA .(((...(((((((((.(((((((...((((...))))..))))))).))))))))).....))). ( -20.20, z-score = -1.54, R) >droMoj3.scaffold_6680 19524818 59 - 24764193 GCGUUUGCUCAUGCGAGCAUUCACUGUAUUUGCAUUACUCAUUUGA-CACAGUUAGUCAA------ ..(..(((((....)))))..)....................((((-(.......)))))------ ( -10.80, z-score = -0.08, R) >consensus GCGAUAAUUUGACGGCACUUCAAUUCUGUUUGUCGAGCUCAUUGAAGCGUUGUCAGAAAGGCUCGA .......(((((((((.(((((((...(((.....)))..))))))).)))))))))......... ( -8.21 = -10.56 + 2.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:34:01 2011