| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,524,419 – 17,524,531 |
| Length | 112 |
| Max. P | 0.590899 |
| Location | 17,524,419 – 17,524,531 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.20 |
| Shannon entropy | 0.52407 |
| G+C content | 0.29329 |
| Mean single sequence MFE | -19.71 |
| Consensus MFE | -9.08 |
| Energy contribution | -9.75 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17524419 112 - 24543557 GACAACAUUUCGGUAUGCCCUUUAAAAUGAGAUACAUUUAUUGAUUAGUCAGUUUGCAACGAAACCAAAACAAUUGAUAAGAGUAUCUUAUAAGAUGUCAUAGUAAGUAAUA-- ((((.(.....((....)).......(((((((((.(((((..(((.((..((((......))))....)))))..))))).)))))))))..).)))).............-- ( -22.40, z-score = -2.41, R) >droEre2.scaffold_4784 9432035 108 + 25762168 UAUGCUAUUUAAGUAUGCCCUUUAAAGAGAGAUACAUUUAUUGAUUAGUCACUUUGCAACGAAACCAAAACAAUUGAUAAGAGUAUCGUAUAAGAUGUCAGAGUAAGC------ ..((((.......(((((.(((....))).(((((.(((((..(((.((...((((.........)))))))))..))))).)))))))))).........))))...------ ( -16.29, z-score = -0.45, R) >droYak2.chr3L 7649105 112 + 24197627 GACAACAUUUAGGUAUGGCCUUUAAAGAGAGAUACAUUUAUUGAUUAGUCACUUUGCAAAAAAACCAAAACAAUAGAUAAGAGUAUCUCAUAAGAUGUCAUAGAAAGUAAUC-- ((((.(....(((.....))).......(((((((.((((((.(((.((...((((.........))))))))).)))))).)))))))....).)))).............-- ( -18.70, z-score = -1.49, R) >droSim1.chr3L 16856451 112 - 22553184 GACAACAUUUCGGUAUGCCCUUUAAAAUGAGAUACAUUUAUUGAUUAGUCAGUUUGCAACGAAACCAAAACAAUUGAUAAGAGUAUCUUAUAGGAUGUCAUAGUAAGUAAUU-- ((((.(.....((....)).......(((((((((.(((((..(((.((..((((......))))....)))))..))))).)))))))))..).)))).............-- ( -22.20, z-score = -1.90, R) >droSec1.super_0 9569143 112 - 21120651 GACAACAUUUCGGUAUGCCCUUUAAAAUGAGAUACAUUUAUUGAUUAGUCAGUUUGCAACGAAACCAAAACAAUUGAUAAGAGUAUCUUAUAAGAUGUCAUAGUAAGUAAUU-- ((((.(.....((....)).......(((((((((.(((((..(((.((..((((......))))....)))))..))))).)))))))))..).)))).............-- ( -22.40, z-score = -2.47, R) >droGri2.scaffold_15110 5884276 101 - 24565398 ------------AUAAGCACUUUUGAAAGUUAAAUAUAUAGAAUUUCAUUGA-AUAUUAGAGUACUUGAAUUCUAGAUGUGAUUUGCAUUUGCGAUUAGAUUGUGAUUCAAGUU ------------......((((((((((...............)))))....-.....)))))(((((((((...(((.(((((.((....))))))).)))..))))))))). ( -16.26, z-score = 0.20, R) >consensus GACAACAUUUCGGUAUGCCCUUUAAAAAGAGAUACAUUUAUUGAUUAGUCAGUUUGCAACGAAACCAAAACAAUUGAUAAGAGUAUCUUAUAAGAUGUCAUAGUAAGUAAUU__ ..........................(((((((((.((((((((((.((...((((.........)))))))))))))))).)))))))))....................... ( -9.08 = -9.75 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:57 2011