| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,523,890 – 17,523,992 |
| Length | 102 |
| Max. P | 0.654058 |
| Location | 17,523,890 – 17,523,992 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.91 |
| Shannon entropy | 0.57789 |
| G+C content | 0.53546 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -14.62 |
| Energy contribution | -15.36 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17523890 102 + 24543557 GUCAUUCUUUCAUUGCAGAAGCUUCUCUAAAAG--AAACAAACAACAACAACACAACAAUGUCGGCACGUUCCAGCGGCUUGGUGGCCGCGGCGGCCCUUCCCG ....((((((....((....)).......))))--))..........................(((.(((....((((((....)))))).))))))....... ( -22.10, z-score = 0.32, R) >droSec1.super_0 9568619 102 + 21120651 GCCAUUCUUUCAUUGCAGAAGCUUCUCUAAAAG--AAACAAACAACAACAACACAACAAUGUCGGCACGUUCCAGCGGCUUGGUGGCCGCGGCGGCCCUUUCCG (((.((((((....((....)).......))))--)).......................(((((......)).((((((....))))))))))))........ ( -23.10, z-score = 0.15, R) >droSim1.chr3L 16855920 102 + 22553184 GCCAUUCUUUCAUUGCAGAAGCUUCUCUAAAAG--AAACAAACAACAACAACACAACAAUGUCGGCACGUUCCAGCGGCUUGGUGGCCGCGGCGGCCCUUCCCG (((.((((((....((....)).......))))--)).......................(((((......)).((((((....))))))))))))........ ( -23.10, z-score = 0.22, R) >droYak2.chr3L 7648573 104 - 24197627 CUCUAUCUUUCAUUGCAGAAGCUUCACUAGAAAGAAAACAACCAACAACAACACAACAAUGUCGGCACGUUCCAGCGGCUUGGUGGCCGCGGCGGCCAUUCCCG .(((.(((......((....))......))).)))............................(((.(((....((((((....)))))).))))))....... ( -25.00, z-score = -0.67, R) >droEre2.scaffold_4784 9431537 103 - 25762168 CUCUAUUUUUCAUUGCAGCAGCUUCUAUAACAA-AAACCAAACAACAACAACACAACAAUGUCGGCACGUUCCAGCGGCUUGGUGGCCGCGGCGGCCAUUCCCG ..............((....))...........-.............................(((.(((....((((((....)))))).))))))....... ( -20.50, z-score = 0.44, R) >droAna3.scaffold_13337 14225858 78 + 23293914 CUUCAUCUUCCGUUGCAGUUUCUUCGCGA-----------------------ACCACAAUGUCGGCACGUUCCAGCGGCUCAGUGGCCGCUGUAGCCGCCG--- ..........(((((..((((......))-----------------------))..))))).((((..(((.((((((((....)))))))).))).))))--- ( -27.00, z-score = -2.45, R) >droWil1.scaffold_181009 206626 85 - 3585778 ---UUUUUUCUUUUGUGUCGUCGUCGCUGUCGG-------------CGGGGAAACACCAUGUCGACACGUUCUAGCGGCACUGUAGCCGCCUCUCCCAUUC--- ---...........((((((.(((((....)))-------------)(((....).))..).))))))......(((((......)))))...........--- ( -28.30, z-score = -2.31, R) >consensus CUCAUUCUUUCAUUGCAGAAGCUUCUCUAAAAG__AAACAAACAACAACAACACAACAAUGUCGGCACGUUCCAGCGGCUUGGUGGCCGCGGCGGCCAUUCCCG ...............................................................(((.(((....((((((....)))))).))))))....... (-14.62 = -15.36 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:56 2011