| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,565,618 – 5,565,779 |
| Length | 161 |
| Max. P | 0.928658 |
| Location | 5,565,618 – 5,565,779 |
|---|---|
| Length | 161 |
| Sequences | 13 |
| Columns | 173 |
| Reading direction | forward |
| Mean pairwise identity | 74.77 |
| Shannon entropy | 0.54131 |
| G+C content | 0.43068 |
| Mean single sequence MFE | -46.48 |
| Consensus MFE | -20.48 |
| Energy contribution | -18.84 |
| Covariance contribution | -1.63 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5565618 161 + 23011544 AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCC-----AGCGUAAGGAUC--UACGAUCUU----UAAGCUAAGGCAAUUUUUUUA-GGCCCCAAGUGGGCUGACUUAGAAAUAAAU .......(((.(((....))).)))(((((((((((((.....)))))....)))))))).........................(((.-----(((.((((((((--...))))))----)).)))..))).((((((...-(((((.....))))).....)))))).... ( -43.10, z-score = -1.52, R) >droSim1.chr2L 5358901 161 + 22036055 AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCC-----AGCGUAAGGAUC--UACGAUCUU----UAAGCUAAGGCAAUUUUUUUA-GGCCCCAAGUGGGCUGACUUAAGAAUACAU ...(((((((.(((....))).)))(((((((((((((.....)))))....))))))))((((.....................(((.-----(((.((((((((--...))))))----)).)))..)))..........-(((((.....)))))))))))))....... ( -43.10, z-score = -1.41, R) >droSec1.super_5 3644009 161 + 5866729 AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUCCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCC-----AGCGUAAGGAUC--UACGAUCUU----UAAGCUAAGGCAAUUUUUUUA-GGCCCCAAGUGGGCUGACUUAAGAAUAAAU ...(((((((.(((....))).)))(((((((((((((.....)))))....))))))))((((.....................(((.-----(((.((((((((--...))))))----)).)))..)))..........-(((((.....)))))))))))))....... ( -43.10, z-score = -1.52, R) >droYak2.chr2L 8695885 161 - 22324452 AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUGCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAGCUCGCCC-----AGCGUAAGGAUC--UACGAUCUU----UUCGCUAAGGCAAUUUUUUUA-GGCCCCAAGUGGGCUGACUUAAGAAUACAU .......(((.(((....))).))).(((((...)))))....(((((((((...))))((((.....))))........)))))(((.-----((((.(((((((--...))))))----).))))..))).((((((...-(((((.....))))).....)))))).... ( -46.40, z-score = -1.44, R) >droEre2.scaffold_4929 5652265 160 + 26641161 AACCUUGUGCAGUGGCAACAUCGCAAGCAAUGAAGUUGCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUAAAACCAAUAUCUCGCCC-----AGCCUACGGAUU--U-CGAUCUU----UUCGCUGAGGCAAUUUUUUUA-GGCCCUAAGUGGGCUGACUUAAGAAUACAU ...(((((((.(((....))).)))((((((((.((.((......)).))..))))))))((((.....................((((-----(((....((((.--.-..)))).----...)))).)))..........-(((((.....)))))))))))))....... ( -43.40, z-score = -1.03, R) >droAna3.scaffold_12916 7182073 155 - 16180835 AUCUUUGCGCAGCGGCAAUAUCGUAACCAAUGAAGU-CCUACUGAGGUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUACCCCGCCAUGG-GGACGUGAAAUAC-------------CGUCCACUACGGCAAUUUUUGGG-AGCCC-GAGAGGGCCAAUUAAUAAUAAAU- ....((((((..(((..((.((((.....)))).))-....)))..))))))((((((.((((((..........((((......(((.(((-(((((........-------------))))).))).))).....)))).-.((((-....)))))))))).))))))..- ( -46.30, z-score = -1.98, R) >dp4.chr4_group4 3309648 166 - 6586962 AGCCUUGUGCAGUGGCAAUACCGCAAGCAAUGAAGCUUCAACUGAGCUGCGUUUAUUGCUAGUUGAAAACUUUAGCCAAUAACUCGCCC-----UCUGUUCGGUUC--CGCACGGUUCUGAUACAGUGAGGCAAUUUUUUUAAGGUCCCAAAAGGGCCGAAUUAUGAAUACAU .....((((...((((.....(....)...(((((.(((((((.(((..........))))))))))..)))))))))((((.((((((-----.((((((((..(--(....))..)))).)))).).)))...........(((((.....))))))).))))...)))). ( -48.00, z-score = -1.19, R) >droPer1.super_10 1134173 166 - 3432795 AGCCUUGUGCAGUGGCAAUACCGCAAGCAAUGAAGCUUCAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUUUAGCCAAUAACUCGCCC-----UCUGUUCGGUUC--CGCAAUGUUCUGAUACAGUGAGGCAAUUUUUUUAAGGUCCCAAAAGGGCCGAAUUAUGAAUACAU .((((..(((.((((.....))))((((......)))).((((((((.((((((((((((((.........)))).)))))).))))..-----...)))))))).--.))..(((......))))..))))...........(((((.....)))))............... ( -45.20, z-score = -0.88, R) >droWil1.scaffold_180708 8739371 172 + 12563649 AACCUUGUGCAGUGGCAAUAUCGUAAGUAAUGAAGUGUUAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUAACUCGCCCAGCUGUGUGUUAGAUCCAUUAGGGUUUUUGCCACAGCUGAGGCAAUUUUUCUAA-GGCUCGCAAGGGCUAACUUAUAAAUAAAU ..(((((((.(((((((((((((((.((.....(((....)))..))))))).))))))).(((((.....))))).........(((((((((((.((.((((((....))))))..)))))))))).)))...........-.)))))))))).................. ( -55.40, z-score = -3.32, R) >droVir3.scaffold_12963 16707047 154 - 20206255 AACCUUGUGCAGUGGCAAUAUCGCAAACAAUGAGGUCACAACCGAGUUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUAACUCGCCC-----UGUGUGAG------------CCACGCUCACGUUGAGGCAAUUUUUUUA--GGCUCGAAAGAGCUGAUUCUUAAAUAAAU ......((.(((((((((((((((((.......(((....)))...)))))).)))))))).)))...))...............((((-----..((((((------------(...)))))))..).)))..........--(((((....)))))............... ( -45.60, z-score = -2.85, R) >droMoj3.scaffold_6500 18471623 156 - 32352404 AACCUUGCGCUGUGGCAAUAUCGCCAACAAUGAGGUGACAACCGAGUUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUAACUCGCCC-----UCUGUGAG------------CCACGCCCACACUGAGGCAAUUUUUUUGAUGACUCGAAAGGGUCGAUUAUGAAAUAAAU ...........(((((....(((((........)))))..((.(((..((((((((((...(((((.....))))))))))).)))).)-----)).))..)------------))))((((.....).))).(((((..(((((((((....))))).)))).))))).... ( -45.00, z-score = -3.04, R) >droGri2.scaffold_15252 14139190 154 - 17193109 AACCUUGUGCAGUGGCAAUAUCGCAAACGAUGAGGUCACAACCGAGUUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUAACUCGCCC-----UGUGGGAG------------CUCUGCUCUCGCUGAGGCAAUUUUUCUA--GGCUCGAAAGAGUCGACUUGAUAAUAAAU ...........(((((..(((((....)))))..)))))...((((((..((((((((...(((((.....))))))))))).))((((-----.(((((((------------(...)))))))).).)))..........--(((((....)))))))))))......... ( -49.20, z-score = -2.94, R) >anoGam1.chr3L 36084619 157 - 41284009 AGCUUUGCGCAGUGGCGAUAUCGUAACCAAUGAGGU-ACAACCGAGGUGCGAUUAUUGCUAGUUGAAAACUAAUACCAAUACCCCGCCUUGG-GGACGUGAAAUAC-------------CGUCCGCUAUGGCAAUUUUUGCA-AACCCCGAAAGGGGUAACAAUUCAUUAAAC .((.((((...(((((......(((.((.....)))-))..((((((((.(..(((((.((((.....))))....)))))..)))))))))-(((((........-------------)))))))))).)))).....)).-.(((((....)))))............... ( -50.50, z-score = -2.81, R) >consensus AACCUUGUGCAGUGGCAAUAUCGCAAGCAAUGAAGUUACAACUGAGCUGCGAUUAUUGCUAGUUGAAAACUUUAACCAAUAACUCGCCC_____UGCGUAAGGAUC__U_CGAUCUU__C_UACGCUGAGGCAAUUUUUUUA_GGCCCCAAAAGGGCUGACUUAUGAAUAAAU ............(((((..(((((.(((.....(((....)))..))))))))...)))))((((....................(((.........................................)))..............(((....))).))))............ (-20.48 = -18.84 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:20 2011