| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,460,290 – 17,460,397 |
| Length | 107 |
| Max. P | 0.724110 |
| Location | 17,460,290 – 17,460,397 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 65.91 |
| Shannon entropy | 0.60309 |
| G+C content | 0.42944 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -10.04 |
| Energy contribution | -8.70 |
| Covariance contribution | -1.34 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17460290 107 - 24543557 CCUGUUCACGUGCUUCGAGAAGACUAAUCAUCGUGACAGGUUUCCUCAGUUUUAUAGCUGAC------AAAAUAUUAGAUCCAAAUACAAGAUC------UAAUAGUCUGAGCUGGCGC (((((.((((.......((....))......))))))))).....((((((....)))))).------....(((((((((.........))))------)))))(((......))).. ( -26.32, z-score = -1.47, R) >droPer1.super_35 549506 83 - 973955 UUUAUUCACGUGCU---------ACCAUCAUCGUGGUAGGGUAUCGUAGUGUUUUAGCUAGC------CAAAUACAAAAUCCGAGCUGAAACGGAGCU--------------------- ....(((((((.((---------(((((....))))))).)...)))...(((((((((...------...............))))))))))))...--------------------- ( -19.17, z-score = -0.65, R) >dp4.chrXR_group6 4140701 83 + 13314419 UUUAUUCACGUGCU---------ACCAUCAUCGUGGUAGGGUAUCGUAGUGUUUUAGCUAGC------CAAAUACAAAAUCCGAGCUGAAACGGAACU--------------------- ....(((((((.((---------(((((....))))))).)...)))..((((((((((...------...............)))))))))))))..--------------------- ( -19.27, z-score = -1.03, R) >droEre2.scaffold_4784 9374673 112 + 25762168 CCUUCUCACGUGCUUGGAAAAGAGUCAUAGUUGUGACAGGUUUCC-CGGUUUUUUAGCUGACCAAAUGCAAAUAUUAGAUCUAAAUACAAGAUC------UAAUAAUCUGAGCUGGCGC ((..((((..(((..(((((...(((((....)))))...)))))-.((((........))))....)))..((((((((((.......)))))------)))))...))))..))... ( -31.70, z-score = -2.66, R) >droYak2.chr3L 7592531 111 + 24197627 CCUUCUCACGUGCUUGGACAAGACUCAACGUCGUGACAGGUUUCC-CGGUUUU-UAGCUGAC------CAAAUAUUAGAUCCAAAUACAAGAUCUACUCGUAGUAAGCUGAGCUGGCGC (((..(((((((.((((.......)))))).))))).)))....(-((((..(-(((((.((------.......((((((.........))))))......)).)))))))))))... ( -25.82, z-score = -0.08, R) >droSec1.super_0 9512924 107 - 21120651 CCUGUUCACGUGCUUGGAGAAGACUAAUCAUCGUGACAGGUUUCCCCGGUUUUAUAGCUGAC------CAAAUAUUAGAUCCAAAUACAAGAUC------UAAUAGUCUGAGCUGGCGC (((((.((((((.((((......)))).)).))))))))).....(((((((.......(((------....(((((((((.........))))------)))))))).)))))))... ( -29.70, z-score = -2.06, R) >droSim1.chr3L 16800670 107 - 22553184 CCUGUUCACGUGCUUGGAAAAGACUAUUCAUCGUGACAGGUUUCCCCGGUUUUAUAGCUGAC------CAAAUAUUAGAUCCAAAUACAAGAUC------UAAUAGUCUGAGCUGCCGC (((((.((((((..(((......)))..)).)))))))))......((((.....(((((((------....(((((((((.........))))------))))))))..)))))))). ( -30.00, z-score = -2.98, R) >consensus CCUGUUCACGUGCUUGGA_AAGACUCAUCAUCGUGACAGGUUUCC_CGGUUUUAUAGCUGAC______CAAAUAUUAGAUCCAAAUACAAGAUC______UAAUAGUCUGAGCUGGCGC ((((.(((((.....................)))))))))......((((......))))........................................................... (-10.04 = -8.70 + -1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:45 2011