| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,442,457 – 17,442,554 |
| Length | 97 |
| Max. P | 0.755092 |
| Location | 17,442,457 – 17,442,554 |
|---|---|
| Length | 97 |
| Sequences | 13 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.55674 |
| G+C content | 0.50995 |
| Mean single sequence MFE | -25.72 |
| Consensus MFE | -16.46 |
| Energy contribution | -16.62 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17442457 97 - 24543557 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGC----GGGGCGGGGGAAGAAAGACGGAAAGGGAGAA---- (((.((.(((...(((.((((((((((.((((......)))).)))(((...-...)))--.)))))))----.)))...))).............)).)))..---- ( -24.74, z-score = -0.36, R) >droSim1.chr3L_random 779658 97 - 1049610 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGC----GGGGCGGGGGAAGAAAGAUGGAAAAGGAGAA---- ((((((.(.((....))((((((((((.((((......)))).)))(((...-...)))--.)))))))----).)))))).......................---- ( -24.60, z-score = -0.48, R) >droSec1.super_0 9495109 96 - 21120651 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGC-----GGGCGGGGGAAGAAAGAUGGAAAGGGAGAA---- ((((((((.((....))))))))))...((((......))))..(((((((.-......--....(((.-----...))).......)))))))..........---- ( -23.67, z-score = -0.03, R) >droYak2.chr3L 7573946 97 + 24197627 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGC----GGGGCAGGGGAAGAAAGAUGGAGAGGGAGAA---- (((.((.(((..((((..(.....(((.((((......)))).)))......-......--....((((----...)))).....)..)))).))))).)))..---- ( -26.00, z-score = -0.77, R) >droEre2.scaffold_4784 9356987 97 + 25762168 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGC----GGGGCAGGGGAAGAAAGAUGGAGAGGGGGAA---- ((((((((.((....))))))))))...((((......))))..(((((((.-......--....((((----...)))).......)))))))..........---- ( -25.27, z-score = -0.47, R) >droAna3.scaffold_13337 8395528 85 - 23293914 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUAG----AAGGGGCGACAAAAGAGAC---------------- ((((((((.((....))))))))))...((((......)))).(((.(((((-(.....--....))))----))..)))............---------------- ( -24.40, z-score = -1.52, R) >dp4.chrXR_group6 4120886 101 + 13314419 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGCAAAAGAGAGAGGGAGAGAGAGGAGAAAGGGGAGAA---- (((.((.(((...(((.((((((((((.((((......)))).)))(((...-...)))--.)))))))...)))))))).)))....................---- ( -25.20, z-score = -1.12, R) >droPer1.super_35 529412 101 - 973955 CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG-GAUGAU--AUUACUGCAAAGGAGAGAGGGAGAGAGAGGAGAAAGGGGAGAA---- (((.((.(((...(((.((((((((((.((((......)))).)))(((...-...)))--.)))))))...)))))))).)))....................---- ( -25.20, z-score = -1.02, R) >droWil1.scaffold_181009 110439 90 + 3585778 CUCGCUACUCAGAUCUGGCGGUGGGGUGGCAUAUAUAGAAGCAGCCAUUUUG-GAUGAU--AUUACUAUAU--AAGAUAAAAUGGGAAGGCAAAA------------- ...(((((((..(((....))).)))))))..........((..((((((((-....((--((....))))--....))))))))....))....------------- ( -22.20, z-score = -1.55, R) >droMoj3.scaffold_6680 20594168 98 + 24764193 CUCGCUGCUCAGAUCCGGCGGUGGGGUGGCAUAUAUGGAUGCGGCCAUUUUG-GAUGAU--AUUACUGUGAAUGGAACGGAACAAGAGGAAGAACGACAAA------- (((..((.((.(.((((((((((((((.((((......)))).)))(((...-...)))--.)))))))...)))).).)).)).))).............------- ( -23.50, z-score = -0.01, R) >droVir3.scaffold_13049 19394422 101 + 25233164 CUCGCUGCUCAGAUCCGGCGGUGGGGUGGCAUAAAUGGAUGCGGCCAUUUUG-GAUGAU--AUUACUGUGA--GA-AUGACA-GCGACAACAAAAAGCAGAAAAGAAA .((((((.(((..((..((((((((((.((((......)))).)))(((...-...)))--.)))))))..--))-.)))))-))))..................... ( -28.30, z-score = -1.50, R) >droGri2.scaffold_15110 13239882 98 - 24565398 UUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCGGCCAUUUUG-GAUGAU--AUUACUGUGU--AC-AAAAUAUACGAAAACAACAUGCAGAGAA---- .(((((((.((....)))))))))(((.((((......)))).))).(((((-.(((..--.....(((((--(.-....)))))).......))).)))))..---- ( -27.94, z-score = -1.86, R) >anoGam1.chr2R 29412248 108 + 62725911 CUCGCCGCUCAGUUCCGGCGGCGGCGUGGCGUAGACUGAGGCAGCCAUCGCGCGCUUGUUGAUCACUGUUACGGGGAGACGGAAUGGAAAGAAAGCAACGAUUUAGAG (((.(((..((((..(((((((((((((((((........)).)))).))).))).)))))...))))...))).))).............................. ( -33.30, z-score = 1.11, R) >consensus CUCGCUGCUCAGAUCUGGCGGUGGGGUGGCAUAUAUGGAUGCAGCCAUUUUG_GAUGAU__AUUACUGC____GGGACAGGGGAAGAAAGAAGAAAAGGGAGAA____ .((((((((.......))))))))(((.((((......)))).))).............................................................. (-16.46 = -16.62 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:43 2011