| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,440,204 – 17,440,304 |
| Length | 100 |
| Max. P | 0.531950 |
| Location | 17,440,204 – 17,440,304 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.42652 |
| G+C content | 0.48661 |
| Mean single sequence MFE | -28.48 |
| Consensus MFE | -19.10 |
| Energy contribution | -18.10 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17440204 100 - 24543557 CUAGUUUU---GGAUGC-GGGGCUGGAGGACUCGGAACACAAUCUUGACACUGGCCAAGGGAAACCCAAUAACUUUGGAUUGGUUUUGGUCCUGGCAAGGAUAU ((((((((---(....)-))))))))(((((.((((((.(((((..............((....))(((.....)))))))))))))))))))........... ( -30.70, z-score = -1.43, R) >droSim1.chr3L 16782021 101 - 22553184 CAAGUUUU---GGAUGCGGGGGCUGAAGGACUCCGAACACAAUCUUGACACUGGCCAAGGGAAAACCAAUAACGUUGGAUUGGUUUUGGUCCUGGCAAGGAUAU ((((..((---(....(((((.........)))))....))).))))...((.((((.((((((((((((........)))))))))..))))))).))..... ( -30.60, z-score = -1.43, R) >droSec1.super_0 9492820 100 - 21120651 CAAGUUUU---GGAUGC-GGGGCUGAAGGACUCGGAACACAAUCUUGACACUGGCCAAGGGAAAACCAAUAACGUUGGAUUGGUUUUGGUCCUGGCAAGGAUAU ...(((..---((((..-.(..((((.....))))..)...)))).))).((.((((.((((((((((((........)))))))))..))))))).))..... ( -28.70, z-score = -1.36, R) >droYak2.chr3L 7571580 104 + 24197627 CAAGUUGCGAAGGAUGCGGGGGCCGAAGGACUCGGAACAUAAUCUUGACACUGGCCAAGGGAAAACCAAUAACGUCGGAUUGGUUUUGGUUCUGGCAAAGAUAU ..(((.(...(((((....(..((((.....))))..)...)))))..)))).((((.((((((((((((........)))))))))..)))))))........ ( -25.40, z-score = -0.05, R) >droAna3.scaffold_13337 8393396 80 - 23293914 ------------GAUGUUUUGGGGGAAGGAGUCUUG----AGUCCUGUCCCUGGCCUAGGGAAA-CCAAUAACCCAAAAUUGGUUCUGGCUUAGGUA------- ------------........((((..((((.(....----).))))..)))).(((((((..((-(((((........)))))))....))))))).------- ( -27.00, z-score = -0.86, R) >consensus CAAGUUUU___GGAUGC_GGGGCUGAAGGACUCGGAACACAAUCUUGACACUGGCCAAGGGAAAACCAAUAACGUUGGAUUGGUUUUGGUCCUGGCAAGGAUAU ............(((....(..((((.....))))..)...))).........((((.(((.((((((((........))))))))...)))))))........ (-19.10 = -18.10 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:42 2011