| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,439,536 – 17,439,626 |
| Length | 90 |
| Max. P | 0.975782 |
| Location | 17,439,536 – 17,439,626 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 94.55 |
| Shannon entropy | 0.09933 |
| G+C content | 0.37809 |
| Mean single sequence MFE | -19.13 |
| Consensus MFE | -15.26 |
| Energy contribution | -16.28 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17439536 90 - 24543557 UAAC-AAAAAUAUCGGCUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCAAUGAUACUAAAAUCCCGGCGACACACACA--- ....-.........(((........))).(((((((((((.....)))....((.....))...............)))))))).......--- ( -21.80, z-score = -3.64, R) >droSim1.chr3L 16781331 90 - 22553184 UAAC-AAAAAUAUCGGCUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCAAUGAUACUAAAAUCCCAACGACACACACA--- ....-.........((.(((((.((((...((((...(((.....)))....))))...))))))))))).....................--- ( -13.60, z-score = -1.49, R) >droSec1.super_0 9492151 90 - 21120651 UAAC-AAAAAUAUCGGCUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCAAUGAUACUAAAAUCCCGGCGACACACACA--- ....-.........(((........))).(((((((((((.....)))....((.....))...............)))))))).......--- ( -21.80, z-score = -3.64, R) >droYak2.chr3L 7570927 91 + 24197627 UAACAAAAAAUAUCGGCUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCAAUGAUACUAAAAUCCCGGCGACACACACA--- ..............(((........))).(((((((((((.....)))....((.....))...............)))))))).......--- ( -21.80, z-score = -3.72, R) >droEre2.scaffold_4784 9353996 91 + 25762168 UAACAAAAAAUAUCGGCUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCAAUGAUACUAAAAUCCCGGCGACACACACA--- ..............(((........))).(((((((((((.....)))....((.....))...............)))))))).......--- ( -21.80, z-score = -3.72, R) >droAna3.scaffold_13337 8392846 93 - 23293914 -UACAAAAAAUAUCAACUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCUAUGAUACUAAAAUCACAACGGCACACACACAC -.......................((((.((((..((((....((((....(((.....))).)))).....)))).))))))))......... ( -14.00, z-score = -2.17, R) >consensus UAAC_AAAAAUAUCGGCUAUCAAUUGCCAGUUGCCGGUUGAAAAUCAAAACAGCAAAUAGCAAUGAUACUAAAAUCCCGGCGACACACACA___ ..............(((........))).(((((((((((.....)))....((.....))...............)))))))).......... (-15.26 = -16.28 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:41 2011