| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,436,128 – 17,436,197 |
| Length | 69 |
| Max. P | 0.549745 |
| Location | 17,436,128 – 17,436,197 |
|---|---|
| Length | 69 |
| Sequences | 11 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.51516 |
| G+C content | 0.39636 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -6.23 |
| Energy contribution | -6.04 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17436128 69 + 24543557 ---UUGCUUUUCCUUCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCUGAGCACC-UAGAAACUG ---.(((((.........((((((((((.(((....)))......)-))))))))).)))))..-......... ( -13.30, z-score = -1.02, R) >droSim1.chr3L 16778038 69 + 22553184 ---UUGCUUUUCCUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCUGAGCACC-UAGAAACUG ---.....((((.(((..((((((((((.(((....)))......)-)))))))))...)))..-..))))... ( -14.40, z-score = -1.12, R) >droSec1.super_0 9488718 69 + 21120651 ---UUGCUUUUCCUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCUGAGCACC-UAGAAACAG ---.((.((((..(((..((((((((((.(((....)))......)-)))))))))...)))..-.)))).)). ( -14.60, z-score = -0.89, R) >droYak2.chr3L 7567610 69 - 24197627 ---UUGCUUUUCCUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCUGAGCACC-UAGAAACUG ---.....((((.(((..((((((((((.(((....)))......)-)))))))))...)))..-..))))... ( -14.40, z-score = -1.12, R) >droEre2.scaffold_4784 9350805 69 - 25762168 ---UUGCUUUUCCUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCUGAGCACC-UAGAAACUG ---.....((((.(((..((((((((((.(((....)))......)-)))))))))...)))..-..))))... ( -14.40, z-score = -1.12, R) >droAna3.scaffold_13337 8389955 68 + 23293914 -----GUUUUCCGAGCGCGCUCAUGGGUUUCUAAUGAGAUUUCCUC-CUAAUGAGGCAAGGACUAUACAAACUA -----....(((....((.((((((((..(((....)))..)))..-...)))))))..)))............ ( -13.80, z-score = -0.10, R) >dp4.chrXR_group6 4114836 72 - 13314419 -UUAUUUUUUCUGUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCGCGGCCCCAUAGAAACUG -......(((((((((((((((((((((.(((....)))......)-))))))))))))....))))))))... ( -25.30, z-score = -5.13, R) >droPer1.super_35 523420 72 + 973955 -UUAUUUUUUCUGUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA-CUAAUGAGCGCGGCCCCAUAGAAACUG -......(((((((((((((((((((((.(((....)))......)-))))))))))))....))))))))... ( -25.30, z-score = -5.13, R) >droVir3.scaffold_13049 19388642 72 - 25233164 UUGUUGUUGCCAACGUACCUUCAUUAGUUUCUAAUGAGAUUUCUUG-CUAAUGAGCAUGCCAAG-CAGAAAAUG ......((((....(((..(((((((((.(((....)))......)-))))))))..)))...)-)))...... ( -13.00, z-score = -0.61, R) >droMoj3.scaffold_6680 20587474 73 - 24764193 UUGUUAUUGCCAACACACCUUCAUUAGUUUCUAAUGAGAUUUCUCGACUAAUGAGCACGCUAAG-CAGAAAUUG ......((((.........((((((((((......(((....)))))))))))))........)-)))...... ( -12.53, z-score = -1.13, R) >droGri2.scaffold_15110 13234479 65 + 24565398 UUGU-GUUGCCAACGUACCUUCAUUAGUUUCUAAUGAGAUUUCAUA-CUAAUGAGCACACUAAG-AAG------ ..((-((.((.........((((((((...))))))))...((((.-...))))))))))....-...------ ( -12.00, z-score = -1.51, R) >consensus ___UUGUUUUCCCUGCGCGUUCAUUGGUUUCUAAUGAGAUUUCUUA_CUAAUGAGCUGAGCACC_UAGAAACUG ...................((((((((((((....))))........))))))))................... ( -6.23 = -6.04 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:40 2011