| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,418,205 – 17,418,342 |
| Length | 137 |
| Max. P | 0.742981 |
| Location | 17,418,205 – 17,418,342 |
|---|---|
| Length | 137 |
| Sequences | 6 |
| Columns | 143 |
| Reading direction | reverse |
| Mean pairwise identity | 81.73 |
| Shannon entropy | 0.34633 |
| G+C content | 0.46384 |
| Mean single sequence MFE | -43.50 |
| Consensus MFE | -27.36 |
| Energy contribution | -29.75 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17418205 137 - 24543557 CGCCUCUGCAGAAGCUCUGUUAAAUCAGCUGUUGGUGCGGAGGCGUUCUCCAAUUGCUAAUUGCAAGU------GCAAACAACUGGCCAGUUGUUGAUUCUUGAAAGGACUUUAUUCGAGACCAGUGCAUCCCGAAGAUAUAC ((((((((((..(((.(((......)))..)))..)))))))))).(((.(..((((.....))))((------((((((((((....)))))))...(((((((.........)))))))....)))))...).)))..... ( -44.50, z-score = -2.28, R) >droAna3.scaffold_13337 8371098 125 - 23293914 -------------GCACUGUUAGAUCAGCUGUU-GUGUGGAGGCGUUUCUUGAGUGACUGUUGCAAGUGCAAACGCAAACAAUUGGCAAAUUGGUGGAAAU---AGGUAUUAAAUUCGCACCCAGUGCCUUGUCUA-ACAUUC -------------....((((((((..((((..-(((((((.((((((((...(((....((((....)))).)))...(((((....)))))..))))))---..))......))))))).)))).....)))))-)))... ( -30.40, z-score = 0.88, R) >droEre2.scaffold_4784 9331707 137 + 25762168 CGCGUCUGCAUAAGCGCUGCUAAAUCAGCUGUUGGUGCGGAGGCGUUCUCCAAUUGCUAAUUGCAAGU------GCAAACAAUUGGCAAGUUGUUGAUUCUUGUAAGGACUUUAUUUGAGACCAGUGCCUACCGAAGACAUUC ...((((((((.(((((((......)))).))).))))(((((((.((((.(((......(((((((.------...(((((((....)))))))....))))))).......))).))))....))))).))..)))).... ( -42.42, z-score = -1.30, R) >droYak2.chr3L 7549628 137 + 24197627 CGCCUCUGCAUCAGCUCUGUUAAAUCAGCUGUUGGUGCGGAGGCGUUCUCCAAUUGCUAAUUGCAAGU------GCAAACAAUUGGCAAGUUGUUGAUUCUUGAAAGGACUUUAUUUGAGACCAGUGCCUUUCGAAGACAUUC (((((((((((((((.(((......)))..))))))))))))))).((..(((((((((((((.....------.....)))))))).)))))..)).(((((((((((((............))).)))))).))))..... ( -51.90, z-score = -4.31, R) >droSec1.super_0 9470644 137 - 21120651 CGCCUCUGCAGAAGCGCUGUUAAAUCAGCUGUUGGUGCGGAGGCGUUCUGCGAUUGCUAAUUGCAAGU------GCAAACAAUUGGCCAGUUGUUGAUUCUUGAAAGGACUUUUUUCGAGACCAGUGCCUCCCGAAGACAUUC ((((((((((..(((((((......)))).)))..)))))))))).(((.((.((((.....))))(.------.(.(((((((....)))))))...(((((((((.....)))))))))...)..)....)).)))..... ( -47.80, z-score = -2.16, R) >droSim1.chr3L 16759145 137 - 22553184 CGCCUCUGCAGAAGCGCUGUUAAAUCAGCUGUUGGUGCGGAGGCGUUCUCCGAUUGCUAAUUGCAAGU------GCAAACAAUUGGCCAGUUGUUGAUUCUUGAAAGGACUUUUUUCCAGACCAGUGCCUCCCAAAGACAUUC ((((((((((..(((((((......)))).)))..)))))))))).((..(((((((((((((.....------.....))))))).))))))..)).((((...((((((..((....))..))).)))....))))..... ( -44.00, z-score = -1.71, R) >consensus CGCCUCUGCAGAAGCGCUGUUAAAUCAGCUGUUGGUGCGGAGGCGUUCUCCAAUUGCUAAUUGCAAGU______GCAAACAAUUGGCAAGUUGUUGAUUCUUGAAAGGACUUUAUUCGAGACCAGUGCCUCCCGAAGACAUUC ((((((((((..(((((((......))).))))..)))))))))).((..(((((((((((((...((......))...)))))))).)))))..)).........((.(((.....))).)).................... (-27.36 = -29.75 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:38 2011