| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,406,131 – 17,406,229 |
| Length | 98 |
| Max. P | 0.913612 |
| Location | 17,406,131 – 17,406,229 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 62.32 |
| Shannon entropy | 0.64436 |
| G+C content | 0.39023 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -8.97 |
| Energy contribution | -10.62 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17406131 98 + 24543557 -----------UUAUGAAGGCUUCCCAUAUGGAAAGCUUACAAAACAAAGAACGGGCAGAUCAAUCAGUUAUUGAAGGUCAAAGUGGUUGGUGG---GGCUUGUGAUAAACA- -----------...((.((((((.((....)).)))))).)).........((((((..((((((((.((..((.....)))).))))))))..---.))))))........- ( -24.30, z-score = -1.39, R) >droSim1.chr3L 16746972 76 + 22553184 -----------AUAUGAAGGCUUCCCAUAUGGGAAGCUUACAAAACAAAGAACGGGCAGAUCAAUCAGUUACUGAAGGUCAAAGUGG-------------------------- -----------...((.(((((((((....))))))))).))................((((..((((...)))).)))).......-------------------------- ( -20.80, z-score = -2.82, R) >droSec1.super_0 9458749 76 + 21120651 -----------AUAUGAAGGCUUCCCAUAUGGGAAGCUUACAAAACAAAGAACGGGCAGAUCAAUCAGUUAUUGAAGGUCAAAGUGG-------------------------- -----------...((.(((((((((....))))))))).)).........((.(((...(((((.....)))))..)))...))..-------------------------- ( -21.10, z-score = -3.16, R) >droEre2.scaffold_4784 9318914 97 - 25762168 ------------UCAAAUGGCUUUCCUUAUGGGAAGCUUACGAAACAAAGAGCGAGCAGAUCAAUCAGUGAUUGAAGGUCAACGUGGUUGGUGG---GGUUUGUGAUAAACA- ------------((....((((((((....))))))))...))........((((((..((((((((.((((.....))))...))))))))..---.))))))........- ( -26.70, z-score = -1.83, R) >droYak2.chr3L 7536013 99 - 24197627 ------------UCAAAUAGCUUUCCUCAUGGCAAGCUUACAAAACAAAGAACGGGCAGAUCAAUCAGUUAUUGAAGGUCAAAGUGGUUGGUGGUGUGGUUUGUGAUAAGC-- ------------......(((((.((....)).)))))......(((((...((.((..((((((((.((..((.....)))).)))))))).)).)).))))).......-- ( -20.90, z-score = -0.15, R) >droMoj3.scaffold_6680 20554252 105 - 24764193 UUCGUGUCACUAUUUAAAAACUUUCUAUA---AACGACUAGAAAUCUACCAAAUAAUAG-UCUAACAAUAAUAUGCACUAAAAAUAAAGCAGAG----AUAAAUGAUAAGCUA ....(((((.(((((..............---...(((((................)))-))...........(((............))).))----)))..)))))..... ( -8.39, z-score = 0.51, R) >consensus ___________AUAUAAAGGCUUCCCAUAUGGGAAGCUUACAAAACAAAGAACGGGCAGAUCAAUCAGUUAUUGAAGGUCAAAGUGGUUGGUGG____GUUUGUGAUAA_C__ .................(((((((((....)))))))))...............(((...(((((.....)))))..)))................................. ( -8.97 = -10.62 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:36 2011