| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,389,227 – 17,389,286 |
| Length | 59 |
| Max. P | 0.614330 |
| Location | 17,389,227 – 17,389,286 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 93.31 |
| Shannon entropy | 0.11354 |
| G+C content | 0.38794 |
| Mean single sequence MFE | -11.52 |
| Consensus MFE | -11.76 |
| Energy contribution | -11.72 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.59 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17389227 59 + 24543557 UGCCUACGGACUUACUAAGAGCUGAAAAAGCUUAGGGUUAAUUCAGUUAAUUCAUGUUU .......(((...(((..(((((.....)))))..)))...)))............... ( -9.40, z-score = 0.11, R) >droEre2.scaffold_4784 9302194 57 - 25762168 GGCCUACGGACUAACUAAGAGCUGAAAGGGCUUAGGGUUAAUUCAGUUAAUUCAUGG-- .......(((.(((((..(((((.....)))))..))))).))).............-- ( -11.50, z-score = -0.30, R) >droYak2.chr3L 7518243 57 - 24197627 AGCCUACGGACUAACUAAGAGCUGAAAGGGCUUAGGGUUAAUUCAGUUAAUUCAUGG-- .......(((.(((((..(((((.....)))))..))))).))).............-- ( -11.50, z-score = -0.29, R) >droSec1.super_0 9440946 58 + 21120651 AGCCUACGGACUAACUAAGAGCUGAAAAAGCUUAGGGUUAAUUCAGUUAAUUCAUGUU- .......(((.(((((..(((((.....)))))..))))).)))..............- ( -12.60, z-score = -1.24, R) >droSim1.chr3L 16730197 58 + 22553184 AGCCUACGGACUAACUAAGAGCUGAAAAAGCUUAGGGUUAAUUCAGUUAAUUCAUGUU- .......(((.(((((..(((((.....)))))..))))).)))..............- ( -12.60, z-score = -1.24, R) >consensus AGCCUACGGACUAACUAAGAGCUGAAAAAGCUUAGGGUUAAUUCAGUUAAUUCAUGUU_ .......(((.(((((..(((((.....)))))..))))).)))............... (-11.76 = -11.72 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:35 2011