| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,329,331 – 17,329,421 |
| Length | 90 |
| Max. P | 0.835312 |
| Location | 17,329,331 – 17,329,421 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.36 |
| Shannon entropy | 0.36221 |
| G+C content | 0.40383 |
| Mean single sequence MFE | -20.99 |
| Consensus MFE | -14.85 |
| Energy contribution | -14.78 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17329331 90 + 24543557 CACAAUUACGAAGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GAAUUUU---ACUCAAGCAGG-------------- ..((((((.((((...((....))...-))))..))))))....((((((.((((....)))).))))))...-.......---...........-------------- ( -19.40, z-score = -1.76, R) >droSim1.chr3L 16667506 90 + 22553184 CACAAUUACGAAGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GAAUUUU---ACUCCAGCAGG-------------- ..((((((.((((...((....))...-))))..))))))....((((((.((((....)))).))))))..(-((.....---..)))......-------------- ( -21.60, z-score = -2.36, R) >droSec1.super_0 9380667 90 + 21120651 CACAAUUACGAAGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GAAUUUU---ACUCCAGCAGG-------------- ..((((((.((((...((....))...-))))..))))))....((((((.((((....)))).))))))..(-((.....---..)))......-------------- ( -21.60, z-score = -2.36, R) >droYak2.chr3L 7457217 90 - 24197627 CACAAUUACGAAGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GAAUUUC---ACUCCCGCAGG-------------- ..((((((.((((...((....))...-))))..))))))....((((((.((((....)))).))))))..(-((.....---..)))......-------------- ( -20.70, z-score = -1.63, R) >droEre2.scaffold_4784 9242428 90 - 25762168 CACAAUUACGAAGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GAAUUUU---ACUCCAGCAGC-------------- ..((((((.((((...((....))...-))))..))))))....((((((.((((....)))).))))))..(-((.....---..)))......-------------- ( -21.60, z-score = -2.19, R) >droAna3.scaffold_13337 8284768 90 + 23293914 CACAAUUACGGAACAGUCGGUGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GAAUUUC---ACUCCAUCAGC-------------- ..((((((.((((.(((.........)-))))))))))))(((.((((((.((((....)))).))))))..(-((.....---..))))))...-------------- ( -19.70, z-score = -1.50, R) >dp4.chrXR_group6 3997123 93 - 13314419 CACAAUUACGGAGCAGUCGAAGGAAAA-CUUUUAUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAC-UCGGCAUUCCACUCCAUAUGC-------------- ..((((((..(((...((....))...-.)))..))))))....((((((.((((....)))).))))))...-...((((..........))))-------------- ( -20.20, z-score = -1.46, R) >droPer1.super_35 408372 93 + 973955 CACAAUUACGGAGCAGUCGAAGGAAAA-CUUUUAUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAC-UCGGCAUUCCACUUCAUAUGC-------------- ..((((((..(((...((....))...-.)))..)))))).((((((((..((((....))))..........-..((....)).))))))))..-------------- ( -21.40, z-score = -2.04, R) >droWil1.scaffold_180955 2116804 108 + 2875958 CACAAUUACGGAGCAGUGGAAAGAAAAACUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG-GCAUUUUCAGACUUCAUGUGCCGCCAGACCAGCCA .........((.....(((((((......))))))).((((...((((((.((((....)))).))))))..(-((((.............))))).)))).))..... ( -26.32, z-score = -1.14, R) >droVir3.scaffold_13049 19271174 95 - 25233164 CACAAUUACGGUGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGAAGCGCACAUGCGUUUCCUUAAAAAGAAAUUUCAAACGUCUCACGAA------------- ..........(((.((.((...((((.-....(((....)))..(((.(((((((....))))))).)))........))))...)).)))))...------------- ( -19.00, z-score = -0.77, R) >droMoj3.scaffold_6680 20470509 103 - 24764193 CACAAUUACGGUGCAGCCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAA-GAAAAAAAAAAUUUGCUAACCUUCUCGUGGG---- (((......((.....))(((((....-....(((....)))..((((((.((((....)))).))))))...-...................)))))..)))..---- ( -22.90, z-score = -1.40, R) >droGri2.scaffold_15110 13138551 89 + 24565398 CACAAUUACGGUGCAGUCGAAGGAAAA-CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAA-GAAAUCC---ACUCCAUGUA--------------- ..((((((.(((....((....))..)-))....))))))....((((((.((((....)))).))))))...-.......---..........--------------- ( -17.50, z-score = -0.66, R) >consensus CACAAUUACGGAGCAGUCGAAGGAAAA_CUUUUCUAAUUGGAUAUGAAGACGCGCACAUGCGUUUCUUUAAAG_GAAUUUU___ACUCCAUCAGC______________ ..(((((.(((.....)))..(((((....))))))))))....((((((.((((....)))).))))))....................................... (-14.85 = -14.78 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:28 2011