| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,326,829 – 17,326,932 |
| Length | 103 |
| Max. P | 0.582112 |
| Location | 17,326,829 – 17,326,932 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 89.02 |
| Shannon entropy | 0.22610 |
| G+C content | 0.36187 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -14.92 |
| Energy contribution | -14.66 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17326829 103 + 24543557 ---GGGUGACAGACAACUUUUGUCAAAUACGUCUAAAAGCAGUAAUUUUUUAUAUUU-GAUAUAAGGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC ---(((((((..((..(((.(((((((((....((((((.(....))))))))))))-)))).))).((((((((.......))))))))))..)))))))...... ( -30.70, z-score = -3.98, R) >droSim1.chr3L 16664993 103 + 22553184 ---GGGUGACAGACAACUUUUGUCAAAUACGUCUAAAAGCAGUAAUUUUUUAUAUUU-GAUAUAAGGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC ---(((((((..((..(((.(((((((((....((((((.(....))))))))))))-)))).))).((((((((.......))))))))))..)))))))...... ( -30.70, z-score = -3.98, R) >droSec1.super_0 9378194 103 + 21120651 ---GGGUGACAGACAACUUUUGUCAAAUACGUCUAAAAGCAGUAAUUUUUUAUAUUU-GAUAUAAGGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC ---(((((((..((..(((.(((((((((....((((((.(....))))))))))))-)))).))).((((((((.......))))))))))..)))))))...... ( -30.70, z-score = -3.98, R) >droYak2.chr3L 7454589 103 - 24197627 ---UGGUGACAGACAACUUUUGUCAAAUACGUCUAAAAGCAGUAAUUUUUUAUAUUU-GAUAUAAGGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC ---.((((((..((..(((.(((((((((....((((((.(....))))))))))))-)))).))).((((((((.......))))))))))..))))))....... ( -29.60, z-score = -3.64, R) >droEre2.scaffold_4784 9239845 103 - 25762168 ---GGGUGACAGACAACUUUUGUCAAAUACGUCUAAAAGCAGUAAUUUUUUAUAUUU-GAUAUAAGGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC ---(((((((..((..(((.(((((((((....((((((.(....))))))))))))-)))).))).((((((((.......))))))))))..)))))))...... ( -30.70, z-score = -3.98, R) >droAna3.scaffold_13337 8282251 103 + 23293914 ---GGGUGACAGACAACUUUUGUCAAACACAUCUAAAAGCAGUCAUUUUUUAUAUUU-GAUAUAAAGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUUCGCGU ---(((((((..((..(((((((((((.......((((.......)))).....)))-)))).))))((((((((.......))))))))))..)))))))...... ( -25.30, z-score = -2.70, R) >dp4.chrXR_group6 9319692 103 + 13314419 ---GAGUGAUAUAGAACUUUUGUCAAAUACGUCUAAAAGCAGUCAUUUUUUAUAUUU-GAUAUAAAGCGGAAAUUCUAAGAGCAUUUCCAGUUCGUUACCUACGCUC ---(((((.....(((((..(((((((((....((((((.......)))))))))))-))))......((((((.(.....).)))))))))))........))))) ( -19.42, z-score = -1.28, R) >droPer1.super_35 567976 103 - 973955 ---GAGUGACAUAGAACUUUUGUCAAAUACGUCUAAAAGCAGUCAUUUUUUAUAUUU-GAUAUAAAGCGGAAAUUCUAAGAGCAUUUCCAGUUCGUUACCUACGCUC ---(((((.....(((((..(((((((((....((((((.......)))))))))))-))))......((((((.(.....).)))))))))))........))))) ( -19.42, z-score = -1.28, R) >droWil1.scaffold_180955 2111579 103 + 2875958 ---AAGUGACAUACAACUUUUGUCAAAUACGUCUAAAAGCAGUCAUUUUUUAUAUUU-GAUAUAAAGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC ---..(((((..((..(((((((((((((....((((((.......)))))))))))-)))).))))((((((((.......))))))))))..)))))........ ( -22.60, z-score = -2.05, R) >droVir3.scaffold_13049 19267426 103 - 25233164 ---UGGUGAUGUACAACUUUUGUCAAACAUGUCUAAGAGCAGUCAUUUUUUAUAUUU-GAUAUAAAACGGAAAUGCUUACCAUGUUUCCGGUUUGUUACCUGCACGC ---.(((((((.((......(((((((.(((...((((.......)))).))).)))-)))).....(((((((.........))))))))).)))))))....... ( -19.80, z-score = -0.16, R) >droMoj3.scaffold_6680 20467130 102 - 24764193 -----CUGAUAUACAGCUUUUGUCAAACAUGUCUAAGAGCAGUCAUUUUUUAUAUUUUGAUAUAAAGCGGAAAUGCUUACCAUGUUUCCGGUUUGUUACCUACACGC -----.(((((.((.((((((((((((.((((..((((.......))))..))))))))))).)))))((((((.........)))))).)).)))))......... ( -19.80, z-score = -0.94, R) >droGri2.scaffold_15110 13136163 106 + 24565398 UGGAUCUGAUGUACAACUUUUGUCAAACAUGUCUAAAAGCAGUCAUUUUUUAUAUUU-GAUAUAAAGCGGAAAUGCUUACCAUGUUUCCGGUUUGUUACCGACACGC ....................(((((((((((.....(((((.((...((((((((..-.))))))))..))..)))))..)))))))..(((.....)))))))... ( -18.60, z-score = 0.25, R) >consensus ___GGGUGACAGACAACUUUUGUCAAAUACGUCUAAAAGCAGUCAUUUUUUAUAUUU_GAUAUAAAGCGGAAAUGCUAAGAACAUUUCCGGUUCGUUACCUACGCGC .....(((((..((..((((((.(......).).)))))........((((((((....))))))))((((((((.......))))))))))..)))))........ (-14.92 = -14.66 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:27 2011