| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,306,616 – 17,306,736 |
| Length | 120 |
| Max. P | 0.832337 |
| Location | 17,306,616 – 17,306,736 |
|---|---|
| Length | 120 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.94 |
| Shannon entropy | 0.24998 |
| G+C content | 0.30007 |
| Mean single sequence MFE | -20.28 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.54 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17306616 120 - 24543557 UAAUUAACAUAAUUUAAUUAUGUGCUCGGCAUUAAUGUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACACUCCCCGCACACAAACAC (((((((......)))))))((((((((((...........)).)))....((((((((......(((((....)))))........)))))))).............)))))....... ( -21.84, z-score = -1.52, R) >droPer1.super_35 385863 116 - 973955 UAAUUAACAUAAUUUAAUUAUGUGCUUGGCAUUAAUUUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUAUACUCCCCAUACACAC---- (((((((......)))))))((((..(((..((((((((......))))))))(((((.((((..(((((....))))).)))).))).))...............)))..)))).---- ( -21.20, z-score = -2.23, R) >dp4.chrXR_group6 3974585 116 + 13314419 UAAUUAACAUAAUUUAAUUAUGUGCUUGGCAUUAAUUUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUAUACUCCCCAUACACAC---- (((((((......)))))))((((..(((..((((((((......))))))))(((((.((((..(((((....))))).)))).))).))...............)))..)))).---- ( -21.20, z-score = -2.23, R) >droAna3.scaffold_13337 8263380 120 - 23293914 UAAUUAACAUAAUUUAAUUAUGUGCUUGGCAUUAAUUUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACACUUCCUACACACACAUAC ..................((((((..((((.((((((((......))))))))))(((.((((..(((((....))))).)))).))).....................))..)))))). ( -19.30, z-score = -1.41, R) >droEre2.scaffold_4784 9219276 120 + 25762168 UAAUUAACAUAAUUUAAUUAUGUGCUCGGCAUUAAUGUGACGCACAAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACACUGCCCUUACACAAACAC ...........((((((((.((((((((.((....))))).))))).))))))))(((.((((..(((((....))))).)))).)))................................ ( -22.30, z-score = -1.43, R) >droYak2.chr3L 7433380 120 + 24197627 UAAUUAACAUAAUUUAAUUAUGUGCUCGGCAUUAAUGUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACUCUCCCCUCACACAAACAC ...........((((((((.(((((..((((....))))..))))).))))))))(((.((((..(((((....))))).)))).)))................................ ( -21.70, z-score = -1.93, R) >droSec1.super_0 9357887 120 - 21120651 UAAUUAACAUAAUUUAAUUAUGUGCUCGGCAUUAAUGUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACACUCUCCGCACACAAACAC (((((((......)))))))((((((((((...........)).)))....((((((((......(((((....)))))........)))))))).............)))))....... ( -21.84, z-score = -1.42, R) >droSim1.chr3L 16643508 120 - 22553184 UAAUUAACAUAAUUUAAUUAUGUGCUCGGCAUUAAUGUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACACUCCCCGCACACAAACAC (((((((......)))))))((((((((((...........)).)))....((((((((......(((((....)))))........)))))))).............)))))....... ( -21.84, z-score = -1.52, R) >droMoj3.scaffold_6680 20445577 97 + 24764193 UAAUUAACAUAAUUUAAUUAGGUGCUCGGCAUUAAUUUUACGCACGGAAUUAAGUGUUGAAUUUUAAGUGUUUCCAUUUUAAUUGAGCGACAUUUUU----------------------- ...(((((((...((((((..((((................))))..))))))))))))).....(((((((.(((.......)).).)))))))..----------------------- ( -15.79, z-score = -0.51, R) >droVir3.scaffold_13049 19240204 97 + 25233164 UAAUUAACAUAAUUUAAUUAGGUGCUCGGCAUUAAUUUUACGCACGGAAUUAAGUGUUGAAUUUUAAGUGUUUCCAUUUUAAUUGAGCGACAUUUUU----------------------- ...(((((((...((((((..((((................))))..))))))))))))).....(((((((.(((.......)).).)))))))..----------------------- ( -15.79, z-score = -0.51, R) >consensus UAAUUAACAUAAUUUAAUUAUGUGCUCGGCAUUAAUGUUACGCACGAAAUUAAGUGUUGAAUUUUAAGUGUCUACACUUUAAUUGAGCGACAUUUUUAUACACUCCCCACACACAAACAC ...........((((((((.(((((................))))).))))))))(((.((((..(((((....))))).)))).)))................................ (-17.57 = -17.54 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:24 2011