| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,303,598 – 17,303,694 |
| Length | 96 |
| Max. P | 0.649024 |
| Location | 17,303,598 – 17,303,694 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 77.80 |
| Shannon entropy | 0.42733 |
| G+C content | 0.56311 |
| Mean single sequence MFE | -30.61 |
| Consensus MFE | -21.39 |
| Energy contribution | -21.11 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.649024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17303598 96 - 24543557 --CAUUUCUGCUCCCGCAAUGUUGGCCAUGUUUUCUAUU----UCUGGGCUCACGUGGCCAUGACGGAGCCCAACGGAAGUUGCCGAAGCCUGAGUCUGAAU --...(((.((((..((....(((((.............----...((((((.(((.......)))))))))(((....)))))))).))..))))..))). ( -31.40, z-score = -1.27, R) >droSim1.chr3L 16640385 96 - 22553184 --CCUUUCUGCUCCCGCAAUGUUGGCCAUGUUUUCUAUU----UCUGGGCUCACGUGGCCAUGACGGCGCCCAACGGAAGUUGCCGAAGCCUGAGUCUGAAU --...(((.((((..((.....(((((((((..((((..----..))))...)))))))))...(((((....((....)))))))..))..))))..))). ( -32.10, z-score = -1.39, R) >droSec1.super_0 9354483 96 - 21120651 --CCUUUCUGCUCCCGCAAUGUUGGCCAUGUUUUCUAUU----UCUGGGCUCACGUGGCCAUGACGGCGCCUAACGGAAGUUGCCGAAGCCUGAGUCUGAAU --...(((.((((..((.....(((((((((..((((..----..))))...)))))))))...(((((....((....)))))))..))..))))..))). ( -32.10, z-score = -1.61, R) >droYak2.chr3L 7429993 96 + 24197627 --CCCUGCUGCUCCUGCCGUGUUGGCCAUGUUUUCUAUU----UCUGGGCUCACGUGGCCAUGACGGCGCCCAACGGAAGUUGCCGAAGCCUGAGUCUGAAU --.......((((..(((((..(((((((((..((((..----..))))...)))))))))..)))))...((((....)))).........))))...... ( -34.30, z-score = -1.57, R) >droEre2.scaffold_4784 9215847 96 + 25762168 --CCUUCCUGCUCCUGCAACGUUGGCCAUGUUUUCUAUU----UCUGGGCUCACGUGGCCAUGACGGCAUCCAACGGAAGUUGCCGAGGCCUGAGUCUGAAU --..(((..((((..((..(((.((((((((..((((..----..))))...))))))))))).(((((....((....)))))))..))..))))..))). ( -33.20, z-score = -1.53, R) >droAna3.scaffold_13337 8260523 102 - 23293914 CCAAGUCCUUAUACCUCUCAGCUAGCCAUGUUUUCGUUUCUCGUCUCGACUCACGUGGCCAUGACGGCGCCCAACGGAAGUUGCCACCGCCACCGCCAGUGG .............((.((..((..(((((((..(((..........)))...)))))))......((((..((((....))))....))))...)).)).)) ( -27.30, z-score = -0.92, R) >dp4.chrXR_group6 3971950 96 + 13314419 --CGCCUCCUCCUCUCCCAUUUUGGCCAUGUUUUUCAUU----UCUCAGCUCACGUGGCCAUGACGGAGACCUGCGGAAGUUGCCAGCUCUAGACCCUGGGG --.((..(.((((((((.....(((((((((........----.........)))))))))....))))).....))).)..))...((((((...)))))) ( -27.23, z-score = -0.04, R) >droPer1.super_35 383240 96 - 973955 --CGCCUCCUCCUCUCCCAUUUUGGCCAUGUUUUUCAUU----UCUCAGCUCACGUGGCCAUGACGGCGACCUGCGGAAGUUGCCAGCUCUAGACCCUGGGG --.............((((...(((((((((........----.........)))))))))....((((((........))))))............)))). ( -27.23, z-score = -0.17, R) >consensus __CCUUUCUGCUCCCGCAAUGUUGGCCAUGUUUUCUAUU____UCUGGGCUCACGUGGCCAUGACGGCGCCCAACGGAAGUUGCCGAAGCCUGAGUCUGAAU ......................(((((((((..((((........))))...)))))))))....(((...((((....)))).....)))........... (-21.39 = -21.11 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:23 2011