| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,265,932 – 17,266,025 |
| Length | 93 |
| Max. P | 0.612507 |
| Location | 17,265,932 – 17,266,025 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.90 |
| Shannon entropy | 0.46525 |
| G+C content | 0.48766 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -14.02 |
| Energy contribution | -13.28 |
| Covariance contribution | -0.74 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17265932 93 + 24543557 -----------------GUAGGUAGCCUGAUGCUUGGUUCUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCC-GGAUUAAGCUCGCCGCUUAUG -----------------(((((..((..((.(((((((((......((((((((((((((((........))..)))))))))).))))-)))))))))))))..))))). ( -34.10, z-score = -2.95, R) >droGri2.scaffold_15110 13084316 85 + 24565398 ----------------UAUUGUUGGCUG----UCCGCUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAAGCGUAGCUACGU-AGCUGGAUUAAGCGUCUUGG----- ----------------........((((----((((((.....(((((((......(((.((........)).))).))))))).-))).))))..))).......----- ( -22.30, z-score = -0.32, R) >droVir3.scaffold_13049 19196492 101 - 25233164 CUUGCCACGUUCUUCUAGUUGUUGGCCA----UACGCUUUUGUUGUGGCUUAGAGUCGCGUCUGAUUAAUGAAGCGUAGCUACGU-AGCUGGAUUAAGGGUCCUGG----- ...(((.(.....(((((((((((((..----((((((((...((((((.....))))))..........)))))))))))).))-)))))))....)))).....----- ( -26.92, z-score = 0.18, R) >droWil1.scaffold_180955 2035673 90 + 2875958 ---------UUGAGCUGGCUGUUGGCUUCGU-UUUGUUCCUGUUGUGGCUUAUAGUCGCGCCUGAUUAAUGAACCGUGGCUAUGUUAGCCGGAUUAAGCU----------- ---------((((.(((((((.(((((.((.-((..((...(.((((((.....)))))).).....))..)).)).)))))...))))))).))))...----------- ( -27.10, z-score = -1.36, R) >droPer1.super_35 341699 89 + 973955 ----------------GCUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAGAGUCGCGCCUGAUUAAUGAACCGUGGCUAUGUGGCU-GGAUUACGCUCCUUGG----- ----------------((((.((((((((...(((((((..((.(((((.....)))))))..)))))).)...)).)))))).)))).-(((......)))....----- ( -26.50, z-score = -0.55, R) >dp4.chrXR_group6 3930163 89 - 13314419 ----------------GCUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAGAGUCGCGCCUGAUUAAUGAACCGUGGCUAUGUGGCU-GGAUUACGCUCCUUGG----- ----------------((((.((((((((...(((((((..((.(((((.....)))))))..)))))).)...)).)))))).)))).-(((......)))....----- ( -26.50, z-score = -0.55, R) >droAna3.scaffold_13337 8222362 94 + 23293914 ----------------GGUAGGUAGCCUGAUGCUUGGUUUUGUUGCGGCUUAUAGUCGCGUCUGAUUAAUGAACCAUGGCCAUGUAGCCAGGAUUAAGC-AGAAGCUUCUG ----------------..((((.(((.(..((((((((......(((((.....)))))..............((.((((......)))))))))))))-)..)))))))) ( -27.10, z-score = -0.28, R) >droEre2.scaffold_4784 9179068 93 - 25762168 -----------------CUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCC-GGAUUAAGCUGGCCGCUUAUG -----------------.((((..(((....((((((((......(((((((((((((((((........))..)))))))))).))))-))))))))).)))..)))).. ( -35.10, z-score = -3.39, R) >droYak2.chr3L 7391499 93 - 24197627 -----------------GUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCC-GGAUUAAGCUGGCCGCUUAUG -----------------(((((..(((....((((((((......(((((((((((((((((........))..)))))))))).))))-))))))))).)))..))))). ( -36.50, z-score = -3.80, R) >droSec1.super_0 9317502 93 + 21120651 -----------------GUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCC-GGAUUAAGCUCGCCGCUUAUG -----------------(((((..((..((.((((((((......(((((((((((((((((........))..)))))))))).))))-)))))))))))))..))))). ( -33.00, z-score = -2.77, R) >droSim1.chr3L 16601942 93 + 22553184 -----------------GUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCC-GGAUUAAGCUCGCCGCUUAUG -----------------(((((..((..((.((((((((......(((((((((((((((((........))..)))))))))).))))-)))))))))))))..))))). ( -33.00, z-score = -2.77, R) >consensus _________________GUAGGUAGCCUGAUGCUUGGUUUUGUUGUGGCUUAUAGUCGCGUCUGAUUAAUGAACCGUGGCUAUGUAGCC_GGAUUAAGCUCGCCGCUU_UG ......................(((((.......((((((.(.((((((.....)))))).)........)))))).)))))............................. (-14.02 = -13.28 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:20 2011