Locus 7777

Sequence ID dm3.chr3L
Location 17,234,189 – 17,234,281
Length 92
Max. P 0.974934
window10698

overview

Window 8

Location 17,234,189 – 17,234,281
Length 92
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 68.75
Shannon entropy 0.49007
G+C content 0.34270
Mean single sequence MFE -20.50
Consensus MFE -10.16
Energy contribution -13.48
Covariance contribution 3.31
Combinations/Pair 1.16
Mean z-score -2.29
Structure conservation index 0.50
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.92
SVM RNA-class probability 0.974934
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17234189 92 - 24543557
AUCAAAACAUGUGAAACUAGAAGCUGUGGAAUAUAUACAUAAUUCCAUGGAUCUAGAUCUUUCGCCUGUUGUGAUAC------GACUGCAAUUCUCAC
((((.((((.(((((((((((..(((((((((.........))))))))).)))))...)))))).)))).))))..------............... ( -25.20, z-score =  -3.42, R)
>droSim1.chr3L 16569090 92 - 22553184
AUCAAAACAUGUGAAACUAGAAGCUGUGGAAUAUAUGCCUAAUUCCAUGGAUCUAGAUCUUUCGCCUGUUGUGAUAC------GAUUGCGAUUCUCAC
((((.((((.(((((((((((..(((((((((.........))))))))).)))))...)))))).)))).))))..------............... ( -25.20, z-score =  -3.04, R)
>droYak2.chr3L 7359260 79 + 24197627
---------------UUCAAAACAUGU-GAAUAUCUCCAUUAUUCCAUAGUUCUGGAACUUUCGCCUGUUAUGAUAC---UUUAGAUACAUUUAUAGU
---------------.(((.((((.((-(((....((((..((......))..))))...))))).)))).))).((---(.((((....)))).))) ( -14.20, z-score =  -1.83, R)
>droEre2.scaffold_4784 9147210 98 + 25762168
UUCAAAACAUGUGAAAUUAGAACUUGUGGAAUAUAUCCAUUAAUCCAUACAUCUGGAACUUUCGCCUGUUAUGUUACGCUUUGAGUUAUAUUUAUAGU
..((.((((.(((((((((((...((((((.((.......)).))))))..)))))...)))))).)))).))....(((.(((((...))))).))) ( -17.40, z-score =  -0.87, R)
>consensus
AUCAAAACAUGUGAAACUAGAACCUGUGGAAUAUAUCCAUAAUUCCAUAGAUCUAGAACUUUCGCCUGUUAUGAUAC______AAUUACAAUUAUAAC
.....((((.(((((((((((..((((((((((.......)))))))))).)))))...)))))).))))............................ (-10.16 = -13.48 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:13 2011