| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,223,836 – 17,223,890 |
| Length | 54 |
| Max. P | 0.795924 |
| Location | 17,223,836 – 17,223,890 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 88.60 |
| Shannon entropy | 0.22240 |
| G+C content | 0.42314 |
| Mean single sequence MFE | -15.03 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.69 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.795924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17223836 54 + 24543557 GUCAAUCGUAGGACGGCAGA--AAAGUUUUUGCCAUUCUU-GCGGUUUAAGUGGGUU- ...((((((((((.((((((--(....)))))))..))))-))))))..........- ( -18.00, z-score = -3.54, R) >droAna3.scaffold_13337 7345386 54 + 23293914 GUCAAUCGAAGAACGGCAGA--AAAGUUUUUGCCAUACUUUGCGGUUUAAGUGGAU-- ....(((.......((((((--(....))))))).(((((........))))))))-- ( -10.70, z-score = -0.62, R) >droEre2.scaffold_4784 9136673 54 - 25762168 GUCAAUCGUGGGACGGCAGA--AAAGUUUUUGCCAUUCUU-GCGGUUUAAGUGGAUU- ...(((((..(((.((((((--(....)))))))..))).-.)))))..........- ( -17.80, z-score = -3.03, R) >droYak2.chr3L 7347452 54 - 24197627 GUCAAUCGUAGGACGGCAGC--AAAGUUUUUGCCAUUCUU-GCGGUUUAAGUGGAUU- ...((((((((((.(((((.--.......)))))..))))-))))))..........- ( -15.70, z-score = -2.41, R) >droSec1.super_0 9275894 54 + 21120651 GUCAAUCGUAGGACGGCGGA--AAAGUUUUUGCAAUUCUU-GCGGUUUAAGUGGAUU- ...((((((((((..(((((--(....))))))...))))-))))))..........- ( -15.00, z-score = -2.52, R) >droSim1.chr3L 16558745 54 + 22553184 GUCAAUCGUAGGACGGCAGA--AAAGUUUUUGCCAUUCUU-GCGGUUUGAGUGGAUU- .((((((((((((.((((((--(....)))))))..))))-)))).)))).......- ( -19.30, z-score = -3.59, R) >dp4.chrXR_group6 391185 57 - 13314419 GUCAAUUGUGGAAUUGCACACAAAAGUUUUUGCUAUUUUU-GCGGUUUAAGUGGAUCU (((.(((...((((((((...((.(((....))).))..)-))))))).))).))).. ( -8.70, z-score = 0.27, R) >consensus GUCAAUCGUAGGACGGCAGA__AAAGUUUUUGCCAUUCUU_GCGGUUUAAGUGGAUU_ ...((((((((((.((((((........)))))).))))..))))))........... (-10.50 = -10.69 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:12 2011