| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,190,736 – 17,190,829 |
| Length | 93 |
| Max. P | 0.943941 |
| Location | 17,190,736 – 17,190,829 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 85.20 |
| Shannon entropy | 0.22980 |
| G+C content | 0.48832 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -14.76 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.943941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17190736 93 - 24543557 CUCUGCUACACCUCCCACCAC----------UCCAUACACACUGAAAACGUGUGUAGAGCGUACAAAUGUAUGUACAAAUCCUUGCCAGAACAUUCGCCAUUU .(((((..............(----------((..((((((((....).)))))))))).(((((......)))))........).))))............. ( -17.70, z-score = -2.08, R) >droYak2.chr3L 7313123 88 + 24197627 CUCCGC--CACCUCUCCUCA-------------CUCACACACUGCAAACGUGUGUGGAGCGUACAAUCGUAUGUACAAAUCCUUGCCAGAACAUUCGCCAUUC ....((--............-------------.((((((((.......)))))))).((((((....))))))......................))..... ( -16.50, z-score = -1.08, R) >droSec1.super_0 9242606 103 - 21120651 CUCUGCCACACCUCCCAUCACACCCACCCCUUCCUCACACACUGAAAACGUGUGUAGAGCGUACAAAUGUAUGUACAAAUCCUUGCCAGAACAUUCGCCAUUC .((((.((.........................((((((((((....).)))))).))).(((((......))))).......)).))))............. ( -18.90, z-score = -2.73, R) >droSim1.chr3L 16525184 103 - 22553184 CUCUGCCACACCUCCCAUCACACCCACCCCUUCCUCACACACUGAAAACGUGUGUAGAGCGUACAAAUGUAUGUACAAAUCCUUGCCAGAACAUUCGCCAUUC .((((.((.........................((((((((((....).)))))).))).(((((......))))).......)).))))............. ( -18.90, z-score = -2.73, R) >consensus CUCUGCCACACCUCCCAUCAC__________UCCUCACACACUGAAAACGUGUGUAGAGCGUACAAAUGUAUGUACAAAUCCUUGCCAGAACAUUCGCCAUUC .((((............................(((((((((.......)))))).))).(((((......)))))..........))))............. (-14.76 = -15.08 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:08 2011