| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,185,968 – 17,186,060 |
| Length | 92 |
| Max. P | 0.908577 |
| Location | 17,185,968 – 17,186,060 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 88.42 |
| Shannon entropy | 0.22008 |
| G+C content | 0.45371 |
| Mean single sequence MFE | -16.49 |
| Consensus MFE | -13.00 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17185968 92 - 24543557 --AAUCCCAGAGCCAAAAACUUUGGCCUGACCGCCCUCGAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACACACUUUCACCCG --.....(((.(((((.....))))))))...(((.....)))........((((((........(((....))).........)))))).... ( -16.53, z-score = -2.61, R) >droSim1.chr3L 16520417 92 - 22553184 --AAUCCCAGAGCCAAAAACUUUGGCCUGACCGCCCUCGAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACACACUUUCACCCG --.....(((.(((((.....))))))))...(((.....)))........((((((........(((....))).........)))))).... ( -16.53, z-score = -2.61, R) >droSec1.super_0 9237836 92 - 21120651 --AAUCCCAGAGCCAAAAACUUUGGCCUGACCGCCCUCGAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACACACUUUCACCCA --.....(((.(((((.....))))))))...(((.....)))........((((((........(((....))).........)))))).... ( -16.53, z-score = -2.47, R) >droYak2.chr3L 7308149 92 + 24197627 --AAUCCCAGAGCCAAAAACUUUGGCCUGACCGCCCUCGAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACACACUUUCACCGG --.....(((.(((((.....)))))))).(((((.....)))........((((((........(((....))).........))))))..)) ( -17.73, z-score = -2.23, R) >droEre2.scaffold_4784 9097187 92 + 25762168 --AAUCCCAGAGCCAAAAACUUUGGCCUGACCGCCCUCGAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACACACUUUCACCGG --.....(((.(((((.....)))))))).(((((.....)))........((((((........(((....))).........))))))..)) ( -17.73, z-score = -2.23, R) >droWil1.scaffold_181009 385016 91 + 3585778 CAAACCUUUUGGCCGUUGCCACCGCC---GCCGCCCUCAAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACUAACAUCUAUACA ..........(((.((.((....)).---)).))).....(((((((((((........)))))).......)))))................. ( -13.91, z-score = -0.62, R) >consensus __AAUCCCAGAGCCAAAAACUUUGGCCUGACCGCCCUCGAGGCAUAUAAAUUGAAAGCUAUUUAUCAUACACAUGCCACACACACUUUCACCCG .......(((.((((((...)))))))))...........(((((((((((........)))))).......)))))................. (-13.00 = -13.28 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:07 2011