| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,501,630 – 5,501,742 |
| Length | 112 |
| Max. P | 0.771449 |
| Location | 5,501,630 – 5,501,742 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.79 |
| Shannon entropy | 0.31674 |
| G+C content | 0.62057 |
| Mean single sequence MFE | -43.13 |
| Consensus MFE | -34.66 |
| Energy contribution | -34.88 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5501630 112 - 23011544 ----AUCCCCACAGCCCAUCUCAUCCUGCCGAGAGGUGGACAGGACCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCG ----....(((((((((.((((........))))(((((.(((((.(.....).)))..)))))))))(((.(((((((.((.......)).))))))))))....)))))))... ( -48.10, z-score = -2.24, R) >droSim1.chr2L 5304342 110 - 22036055 ----AUACC--CGGCCCAUCUCAUCCUGCCGAGAGGUGGACAGGACCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCU ----.....--.(((((.((((........))))(((((.(((((.(.....).)))..))))))).)))))(((((((.((.......)).)))))))((((.......)))).. ( -45.50, z-score = -1.19, R) >droSec1.super_5 3580037 110 - 5866729 ----AUACC--CGGCCCAUCUCAUCCUGCCGAGAGGUGGACAGGACCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCU ----.....--.(((((.((((........))))(((((.(((((.(.....).)))..))))))).)))))(((((((.((.......)).)))))))((((.......)))).. ( -45.50, z-score = -1.19, R) >droYak2.chr2L 8630478 94 + 22324452 ----------------------AUCCUGCCGAGAGGAGGACAGGACCAGAGCGAUCCAACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAAGUUGUGGUCU ----------------------.((((.((....))))))..((((((.(((........(((.....)))((((((((.((.......)).))))))))......))).)))))) ( -42.40, z-score = -2.18, R) >droEre2.scaffold_4929 5586945 98 - 26641161 -----------------AUCCCA-ACUGCCGAGAGGAGGACAGGACCAGAGCGAUCCGACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCU -----------------......-.(((((.......)).)))(((((.((((..(((.......)))(((.(((((((.((.......)).))))))))))...)))).))))). ( -41.20, z-score = -1.37, R) >droAna3.scaffold_12916 6533040 113 + 16180835 AUCCACAUCC-CUUCCCAAGCCAUCCACCUAUGAGGCGGACAGGACCAGAGCGAUCCG-CGCCGCCGGGCUCGG-CCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUAAGGUUG .........(-(((..((((((...((....)).(((((...(((.(.....).))).-..))))).))))(((-(((....((((....)))))))))).....))..))))... ( -36.10, z-score = -0.16, R) >consensus ____AUACC__C_GCCCAUCUCAUCCUGCCGAGAGGUGGACAGGACCAGAGCGAUCCAACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCU .........................(..((....))..)....(((((.(((...((.........))((.((((((((.((.......)).))))))))))....))).))))). (-34.66 = -34.88 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:15 2011