| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,170,420 – 17,170,518 |
| Length | 98 |
| Max. P | 0.927420 |
| Location | 17,170,420 – 17,170,518 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 90.43 |
| Shannon entropy | 0.17231 |
| G+C content | 0.50404 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -25.92 |
| Energy contribution | -25.28 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17170420 98 - 24543557 GUGGUUAAUAAAUAUGCGGCCCGGUCCCGAAACAGGAAACAAGGAUACGCCACCAGGAUCAGCCAUCAGCAGGCAUUGCAUACUUAU--GGGCCACCUCC------- (((((..((((.(((((.(((.(((((.(.....(....)..((.....))..).))))).((.....)).)))...))))).))))--..)))))....------- ( -31.50, z-score = -1.70, R) >droAna3.scaffold_13337 7293697 106 - 23293914 GUGGUUAAUAAAUAUGCGCACCAGUUCCG-AGCAGGAAACAAGGAUACACGGUUAGGAUCAGCCAUCAGCAGGCAUUGCAUACUUAUGGGGGCUGCAUAUAAAUUUC (..(((.((((.(((((......(.(((.-(((.(....)..(......).))).))).).(((.......)))...))))).))))...)))..)........... ( -24.30, z-score = -0.25, R) >droEre2.scaffold_4784 9081348 98 + 25762168 GUGGUUAAUAAAUAUGCGCCCCGGUUCCGAAACAGGAAACAAGGAUACGCCACCAGGAUCAGCCAUCAGAAGGCAUUGCAUACUUAU--AGGCCACCUCC------- (((((..((((.(((((..((.((((((......))).....((.....))))).))....(((.......)))...))))).))))--..)))))....------- ( -29.70, z-score = -2.55, R) >droYak2.chr3L 7292186 98 + 24197627 GUGGUUAAUAAAUAUGCGCCCCGGUUCCGAAACAGGAAACAAGGAUACGCCACCAGGAUCAGCCAUCAGAAGGCAUUGCAUACUUAU--AGGCCACCUCC------- (((((..((((.(((((..((.((((((......))).....((.....))))).))....(((.......)))...))))).))))--..)))))....------- ( -29.70, z-score = -2.55, R) >droSec1.super_0 9222394 98 - 21120651 GUGGUUAAUAAAUAUGCGCCCCGGUCCCGAAACAGGAAACAAGGAUACGCCACCAGGAUCAGCCAUCAGCAGGCAUUGCAUACUUAU--AGGCCACCUCC------- (((((..((((.(((((.....(((((.(.....(....)..((.....))..).))))).(((.......)))...))))).))))--..)))))....------- ( -30.30, z-score = -2.39, R) >droSim1.chr2h_random 1114937 98 + 3178526 GUGGUUAAUAAAUAUGCGCCCCGGUCCCGAAACAGGAAACAAGGAUACGCCACCAGGAUCAGCCAUCAGCAGGCAUUGCAUACUUAU--AGGCCACCUCC------- (((((..((((.(((((.....(((((.(.....(....)..((.....))..).))))).(((.......)))...))))).))))--..)))))....------- ( -30.30, z-score = -2.39, R) >consensus GUGGUUAAUAAAUAUGCGCCCCGGUCCCGAAACAGGAAACAAGGAUACGCCACCAGGAUCAGCCAUCAGCAGGCAUUGCAUACUUAU__AGGCCACCUCC_______ ((((((.((((.(((((.....(((((.......(....)..((........)).))))).(((.......)))...))))).))))...))))))........... (-25.92 = -25.28 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:02 2011