| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,169,532 – 17,169,631 |
| Length | 99 |
| Max. P | 0.541829 |
| Location | 17,169,532 – 17,169,631 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 86.95 |
| Shannon entropy | 0.28106 |
| G+C content | 0.42766 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -14.74 |
| Energy contribution | -16.25 |
| Covariance contribution | 1.51 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17169532 99 - 24543557 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG-----CACGCACGCCAACAGCAGAA------ ((((((.(((((((((........)).....))))))).(((((((......)))))))................((((-----......))))..))))))..------ ( -27.20, z-score = -2.66, R) >droSim1.chr3R 9416760 99 - 27517382 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG-----CACGCACGCCAACAGCAGAA------ ((((((.(((((((((........)).....))))))).(((((((......)))))))................((((-----......))))..))))))..------ ( -27.20, z-score = -2.66, R) >droSec1.super_0 9221554 99 - 21120651 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG-----CACGCACGCCAACAGCAGAA------ ((((((.(((((((((........)).....))))))).(((((((......)))))))................((((-----......))))..))))))..------ ( -27.20, z-score = -2.66, R) >droYak2.chr3L 7291352 99 + 24197627 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG-----CACGCACGCCAACAGCAGAA------ ((((((.(((((((((........)).....))))))).(((((((......)))))))................((((-----......))))..))))))..------ ( -27.20, z-score = -2.66, R) >droEre2.scaffold_4784 9080523 99 + 25762168 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG-----CACGCACGCCAACAGCAGAA------ ((((((.(((((((((........)).....))))))).(((((((......)))))))................((((-----......))))..))))))..------ ( -27.20, z-score = -2.66, R) >droAna3.scaffold_13337 7292800 99 - 23293914 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACAGCG-----CACGCACGCCAAGCGCAGAA------ ((((((((((((((((........)).....))))))).(((((((......)))))))............)))..(((-----......))).....))))..------ ( -21.80, z-score = -0.48, R) >dp4.chrXR_group6 13309840 103 - 13314419 CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCGGCGCACGCACACGCCAACAGCAGA------- ((((((.(((((((((........)).....))))))).(((((((......)))))))................(((((.(....).).))))..)))))).------- ( -28.20, z-score = -2.10, R) >droVir3.scaffold_13049 20297535 103 + 25233164 CUGCCACCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCAGGGCG-----CACGCACGCCCAAAGCAGACCCGG-- ((((...(((((((((........)).....))))))).(((((((......)))))))...............(((((-----......)))))...))))......-- ( -26.30, z-score = -2.51, R) >droGri2.scaffold_15110 10006762 97 - 24565398 ------CCAUUGAGCCUACAAUAAACUAAUCUCCAAUAAAUUUUGAUAACUAUAUUAACAUAAAUUGUAAAGCUUGGAG-----CUCGCAAGCCAAGAGCAGACCCCG-- ------...(..(((.((((((...........(((......))).....(((......))).))))))..)))..).(-----(((.........))))........-- ( -12.80, z-score = -0.76, R) >droMoj3.scaffold_6680 21440362 105 + 24764193 CUGCCACCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUGGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG-----CACGCACGCCAAACGCAGAGACCCGG ((((....................((((((((((((.....))))))))((((......))))......))))..((((-----......))))....))))........ ( -22.60, z-score = -0.97, R) >consensus CUGCUGCCAUUGAAGCAAACAUAAGCGACUUUUCAAUGAGUUUCGAAAGUUAUUGAAACAUAAAUUAUAUCGCACGGCG_____CACGCACGCCAACAGCAGAA______ ((((...(((((((((........)).....))))))).(((((((......)))))))................((((...........))))....))))........ (-14.74 = -16.25 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:33:01 2011