| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,161,474 – 17,161,571 |
| Length | 97 |
| Max. P | 0.624274 |
| Location | 17,161,474 – 17,161,571 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 92.28 |
| Shannon entropy | 0.13423 |
| G+C content | 0.34168 |
| Mean single sequence MFE | -16.15 |
| Consensus MFE | -16.24 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.64 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17161474 97 - 24543557 UGAUUUAUCGCAAGGUCAGGGCAGAAUAUAAAGUAAAACUGUUCUGACACCAACCCAUUAAAAUGCCACUUUUCUAUUAUGAAAGUCAGACAGUUUU ((.((.(((....))).))..))...........((((((((.(((((.......(((....))).....((((......))))))))))))))))) ( -18.20, z-score = -1.02, R) >droEre2.scaffold_4784 9072973 95 + 25762168 UGAUUUAUCGCAAGGUCAGGGUAGAAUAUAAAAUAAAACUGUUCCGACACAAGCCCAUUAAAAUGCCACUUAUU--AUAUAAAAGUCAGACAGUUUU ((((((..(....)(((.(..(((..............)))..).)))..........................--......))))))......... ( -10.94, z-score = 0.53, R) >droYak2.chr3L 7283310 95 + 24197627 UGAUUUAUCGCAAGGUCAGGGUAGAAUAUAAUGUAAAACUGUUCUGACAUCAACCCAUUAAAACGCCACUUAUU--AUAUAAAAGUCAGACAGUUUU ((((((..(....)(((((..(((..............)))..)))))..........................--......))))))......... ( -15.54, z-score = -0.74, R) >droSec1.super_0 9213557 95 - 21120651 UGAUUUAUCGCAAGGUCAGGGCAGAAUAUAAAGGAAAACUGUUCUGACACCAAGCCAUUAAAAUGCCACUUAUU--AUAUGAAAGUCAGACAGUUUU ((((((..(....)((((((((((..............))))))))))..........................--......))))))......... ( -18.04, z-score = -0.83, R) >droSim1.chr3L 16500886 95 - 22553184 UGAUUUAUCGCAAGGUCAGGGCAGAAUAUAAAGUAAAACUGUUCUGACACCAAGCCAUUAAAAUGCCACUUAUU--AAAUGAAAGUCAGACAGUUUU ((((((..(....)((((((((((..............))))))))))..........................--......))))))......... ( -18.04, z-score = -1.16, R) >consensus UGAUUUAUCGCAAGGUCAGGGCAGAAUAUAAAGUAAAACUGUUCUGACACCAACCCAUUAAAAUGCCACUUAUU__AUAUGAAAGUCAGACAGUUUU ((((((..(....)(((((..(((..............)))..)))))..................................))))))......... (-16.24 = -16.20 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:59 2011