| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,149,294 – 17,149,385 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 17,149,294 – 17,149,385 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 87.08 |
| Shannon entropy | 0.17888 |
| G+C content | 0.53328 |
| Mean single sequence MFE | -28.33 |
| Consensus MFE | -25.64 |
| Energy contribution | -25.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 17149294 91 + 24543557 UAUAUCUGUGUAUGUGUGUGUGUGUCAGAGGGUGCGUAUCAGUAUGGGUGCUUUUUCCAGAGAGCGCUGUGCGUGUGUGCGCCUCGUCAUU ....(((((..((......))..).))))(((.((((((((((((((.(((((((....))))))))))))).)).)))))))))...... ( -27.20, z-score = -0.62, R) >droSim1.chr3L 16485996 89 + 22553184 --UAUGUGUGUGUGUGAGUGUGAGUUAGAGGGUGCGUAUGAGUAUGGGUGCUCUUUCCAGAGAGCGCUGUGCGUGUGUGCGCCUCGUCAUU --.................((((....((((.(((((((..((((((.(((((((....)))))))))))))..))))))))))).)))). ( -28.40, z-score = -1.45, R) >droSec1.super_0 9201135 83 + 21120651 --------UAUGCGUGUGUGUGUGUCAGAGGGUGCGUGUGAGUAUGGGUGCUCUUUCCAGAGAGCGCUGUGCGUGUGUGCGCCUCGUCAUU --------((((((....))))))...((((.((((..(..((((((.(((((((....)))))))))))))..)..))))))))...... ( -29.40, z-score = -1.13, R) >consensus __UAU_UGUGUGUGUGUGUGUGUGUCAGAGGGUGCGUAUGAGUAUGGGUGCUCUUUCCAGAGAGCGCUGUGCGUGUGUGCGCCUCGUCAUU ...........................((((.(((..((..((((((.(((((((....)))))))))))))..))..)))))))...... (-25.64 = -25.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:58 2011