| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,140,329 – 17,140,424 |
| Length | 95 |
| Max. P | 0.809944 |
| Location | 17,140,329 – 17,140,424 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 94.94 |
| Shannon entropy | 0.09533 |
| G+C content | 0.47132 |
| Mean single sequence MFE | -29.33 |
| Consensus MFE | -27.46 |
| Energy contribution | -27.30 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17140329 95 + 24543557 ----------CUGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAGAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ----------(((((((((((((.(..((.((......)).))).)))))))).)))))..................((((((((((....)))))))))).... ( -29.70, z-score = -1.71, R) >droWil1.scaffold_181009 327426 105 - 3585778 AUGGCGGCAACGGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAAAACAGAUUUACUCCAAAGUGUGAAAUUUUGAUUGAAUUUAUAGCAA ..((((((..(.((....)).)..))))))...........((((.....((((.(((((.....)))))..((((((.....))))))..))))....)))).. ( -28.80, z-score = -0.62, R) >droSim1.chr3L 16476749 95 + 22553184 ----------CUGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAGAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ----------(((((((((((((.(..((.((......)).))).)))))))).)))))..................((((((((((....)))))))))).... ( -29.70, z-score = -1.71, R) >droSec1.super_0 9192346 95 + 21120651 ----------CUGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAGAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ----------(((((((((((((.(..((.((......)).))).)))))))).)))))..................((((((((((....)))))))))).... ( -29.70, z-score = -1.71, R) >droYak2.chr3L 7259881 95 - 24197627 ----------CUGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAGAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ----------(((((((((((((.(..((.((......)).))).)))))))).)))))..................((((((((((....)))))))))).... ( -29.70, z-score = -1.71, R) >droEre2.scaffold_4784 9050760 95 - 25762168 ----------CUGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAGAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ----------(((((((((((((.(..((.((......)).))).)))))))).)))))..................((((((((((....)))))))))).... ( -29.70, z-score = -1.71, R) >droAna3.scaffold_13337 7265042 95 + 23293914 ----------CGGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAAAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ----------..(((((.(.(((((((((.((......)).)).))))))).)..(((((.....))))))))....((((((((((....)))))))))))).. ( -28.00, z-score = -1.27, R) >consensus __________CUGCGGAAGCGGCGGCUGCUGAAAUAACUCCGCUGGCUGCUUCACGUAGAACAGAUUUACUCCAAAGUGUGAAAUCUUGAUGGGUUUUAUAGCAA ............(((((.(.(((((((((.((......)).)).))))))).)..(((((.....))))))))....((((((((((....)))))))))))).. (-27.46 = -27.30 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:57 2011