| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,135,025 – 17,135,120 |
| Length | 95 |
| Max. P | 0.746179 |
| Location | 17,135,025 – 17,135,120 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.55 |
| Shannon entropy | 0.35667 |
| G+C content | 0.60926 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -23.67 |
| Energy contribution | -24.68 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17135025 95 + 24543557 AACUGCGACUGCUGCUGUUGAUGGCCUCGCAUCUGGAUGGGCGGAUGCUGGGCGGAAAAUGGGCGAAGGGCUGGGGCAUGGGAUA-GAGGAAGAGC-------- ....((..((.((.(((((....((((((((((((......)))))))............((.(....).)))))))....))))-).)).)).))-------- ( -28.60, z-score = -0.43, R) >droSim1.chr3L 16471486 95 + 22553184 AACUGCGACUGCUGCUGUUGAUGGCCUCGCAUCUGGAUGGGCGGAUGCUGGGCGGAAAAUGGGCGAUGGGAUGGGGCAUGGGAUA-GAGGAAAAGC-------- ...(((..((.((..((((.((.((((.(((((((......))))))).)))).....)).))))..)).).)..))).......-..........-------- ( -25.40, z-score = -0.27, R) >droYak2.chr3L 7254363 104 - 24197627 AACUGCGACUGCUGCUGUUGAUGGCCUCGCAUCUGGCUGGGUGGCUGCUGUGUGGGAAAUGGGGGCGGGGAUGGGGCGUGGGGCGUGGGGCAGAGAGAAAAAGU ..((((..(..(.(((.(.....(((((((((((....)))))(((.((((.......)))).))).....))))))..).))))..).))))........... ( -31.60, z-score = 0.43, R) >droEre2.scaffold_4784 9045394 83 - 25762168 AACUGCGACUGCUGCUGUUGAUGGCCUCGCAUCUGGAUGGGUGGAUGCUGGGCGGGAAAUGGGGGCAGGGAUGGAGGAAAAGC--------------------- ..((.((.(((((.(((((..(.((((.((((((........)))))).)))).)..))))).)))))...)).)).......--------------------- ( -33.20, z-score = -4.49, R) >consensus AACUGCGACUGCUGCUGUUGAUGGCCUCGCAUCUGGAUGGGCGGAUGCUGGGCGGAAAAUGGGCGAAGGGAUGGGGCAUGGGAUA_GAGGAAGAGC________ ..((.((.(((((.(((((..(.((((.(((((((......))))))).)))).)..))))).)))))...)).))............................ (-23.67 = -24.68 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:57 2011