| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,126,307 – 17,126,376 |
| Length | 69 |
| Max. P | 0.527576 |
| Location | 17,126,307 – 17,126,376 |
|---|---|
| Length | 69 |
| Sequences | 12 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 85.96 |
| Shannon entropy | 0.32212 |
| G+C content | 0.48588 |
| Mean single sequence MFE | -14.53 |
| Consensus MFE | -11.16 |
| Energy contribution | -11.41 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17126307 69 - 24543557 CUCCGCAGUUCCGCGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU ...(((......))).(((((((......)))))))........(((((((........))))).)).. ( -15.60, z-score = -0.98, R) >droSim1.chr3L 16462224 69 - 22553184 CUCCGCAGUUCCGCGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU ...(((......))).(((((((......)))))))........(((((((........))))).)).. ( -15.60, z-score = -0.98, R) >droSec1.super_0 9178525 69 - 21120651 CUCCGCAGUUCCGCGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU ...(((......))).(((((((......)))))))........(((((((........))))).)).. ( -15.60, z-score = -0.98, R) >droYak2.chr3L 7245556 69 + 24197627 CUCCGCAGUUCCGCGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGC ............(((((((((((......)))))))..........(((((........))))).)))) ( -15.70, z-score = -0.74, R) >droEre2.scaffold_4784 9036795 69 + 25762168 CUCCGCAGUUCCGCGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU ...(((......))).(((((((......)))))))........(((((((........))))).)).. ( -15.60, z-score = -0.98, R) >droAna3.scaffold_13337 7250903 61 - 23293914 --------CUCCGUGUGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU --------....(.(.(((((((......))))))).).)....(((((((........))))).)).. ( -13.30, z-score = -1.29, R) >dp4.chrXR_group6 13257299 64 - 13314419 -----CGGUGCCUGGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUUCAU -----...(((((((........)))))))....(((......)))(((((........)))))..... ( -16.20, z-score = -1.05, R) >droPer1.super_250 20359 64 - 39459 -----CGGUGCCUGGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUUCAU -----...(((((((........)))))))....(((......)))(((((........)))))..... ( -16.20, z-score = -1.05, R) >droWil1.scaffold_181009 310637 69 + 3585778 UCCAUUCAUUCUCCGCGCAAUUUCCAGCCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUACGCGC .............((((((((((......)))))))...........((((........))))..))). ( -10.50, z-score = -2.05, R) >droVir3.scaffold_13049 20247236 67 + 25233164 CUCGACAGGUUC--GCGCAAUUUCCAGCCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU .......((...--(.(((((((......))))))).)))....(((((((........))))).)).. ( -13.50, z-score = -0.82, R) >droMoj3.scaffold_6680 21387556 67 + 24764193 CUCGACAGGUUC--GCGCAAUUUCCAGCCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU .......((...--(.(((((((......))))))).)))....(((((((........))))).)).. ( -13.50, z-score = -0.82, R) >droGri2.scaffold_15110 9962022 56 - 24565398 -----------C--GCGCAAUUUCCAGCCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU -----------.--..(((((((......)))))))........(((((((........))))).)).. ( -13.00, z-score = -2.27, R) >consensus CUCCGCAGUUCCGCGCGCAAUUUCCAGGCAAGUUGCUCCCAUUAGCCACAUAAUUUUAAGUGUGUGCGU ................(((((((......)))))))........(((((((........))))).)).. (-11.16 = -11.41 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:56 2011