| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,494,411 – 5,494,523 |
| Length | 112 |
| Max. P | 0.984035 |
| Location | 5,494,411 – 5,494,523 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.11744 |
| G+C content | 0.38639 |
| Mean single sequence MFE | -26.80 |
| Consensus MFE | -26.80 |
| Energy contribution | -26.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.984035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5494411 112 + 23011544 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.13, R) >droSim1.chr2L 5297264 112 + 22036055 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.13, R) >droYak2.chr2L 8622882 112 - 22324452 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAACUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.01, R) >droEre2.scaffold_4929 5579486 112 + 26641161 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.13, R) >droAna3.scaffold_12916 6525810 112 - 16180835 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.13, R) >dp4.chr4_group1 4805643 112 + 5278887 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.13, R) >droPer1.super_5 6402242 112 - 6813705 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... ( -26.80, z-score = -2.13, R) >droWil1.scaffold_180708 667641 109 + 12563649 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAGAAAAG--- ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............--- ( -26.80, z-score = -2.48, R) >droVir3.scaffold_12963 453876 102 - 20206255 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAGCAGCUGUUGAAAAA---------- ......((((((((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...)))))).)))..))))).....---------- ( -26.80, z-score = -2.02, R) >droMoj3.scaffold_6500 23450852 106 + 32352404 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAGCAGCUGUUGAAAAAAAGC------ ......((((((((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...)))))).)))..))))).........------ ( -26.80, z-score = -1.75, R) >droGri2.scaffold_15252 5976457 111 - 17193109 AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCGUUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAGCAGCUGUUGAAAAAAGCCAAUGC- ......((((((((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...)))))).)))..)))))..............- ( -26.80, z-score = -0.99, R) >consensus AAUUGCCAACAUGCCAGAGAUUACCAACUGUCAGUUGAAUGUCAUGCCAAUGGAACAUGCCGUCAACUGAAGUGUUGAACUAAUUUAACAGCUGUUGAAAAAAAAUAUAUGC ......(((((.((...((((((.((((..((((((((.((.((((((...))..)))).))))))))))...))))...))))))....)))))))............... (-26.80 = -26.80 + 0.00)
| Location | 5,494,411 – 5,494,523 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.11744 |
| G+C content | 0.38639 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -27.23 |
| Energy contribution | -27.03 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5494411 112 - 23011544 GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.60, R) >droSim1.chr2L 5297264 112 - 22036055 GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.60, R) >droYak2.chr2L 8622882 112 + 22324452 GCAUAUAGUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.25, R) >droEre2.scaffold_4929 5579486 112 - 26641161 GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.60, R) >droAna3.scaffold_12916 6525810 112 + 16180835 GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.60, R) >dp4.chr4_group1 4805643 112 - 5278887 GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.60, R) >droPer1.super_5 6402242 112 + 6813705 GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ((.................(((((......)))))(((((..((((((((..(((((((.....)))))).)..))))))))..((..(......)..)).))))))).... ( -27.40, z-score = -1.60, R) >droWil1.scaffold_180708 667641 109 - 12563649 ---CUUUUCUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ---...........(((((((((.....((((..(((((...((((((((..(((((((.....)))))).)..))))))))..)))))))))....))).))))))..... ( -26.50, z-score = -1.56, R) >droVir3.scaffold_12963 453876 102 + 20206255 ----------UUUUUCAACAGCUGCUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ----------........(((((((((.......(((((...((((((((..(((((((.....)))))).)..))))))))..))))).......))))).))))...... ( -28.84, z-score = -2.26, R) >droMoj3.scaffold_6500 23450852 106 - 32352404 ------GCUUUUUUUCAACAGCUGCUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ------............(((((((((.......(((((...((((((((..(((((((.....)))))).)..))))))))..))))).......))))).))))...... ( -28.84, z-score = -1.94, R) >droGri2.scaffold_15252 5976457 111 + 17193109 -GCAUUGGCUUUUUUCAACAGCUGCUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAACGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU -((.((((......))))(((((((((.......(((((...((((((((..(((((((.....)))))).)..))))))))..))))).......))))).)))))).... ( -30.74, z-score = -1.82, R) >consensus GCAUAUAUUUUUUUUCAACAGCUGUUAAAUUAGUUCAACACUUCAGUUGACGGCAUGUUCCAUUGGCAUGACAUUCAACUGACAGUUGGUAAUCUCUGGCAUGUUGGCAAUU ..................(((((((((.......(((((...((((((((..(((((((.....)))))).)..))))))))..))))).......))))).))))...... (-27.23 = -27.03 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:14 2011