| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,118,312 – 17,118,378 |
| Length | 66 |
| Max. P | 0.567536 |
| Location | 17,118,312 – 17,118,378 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 95.45 |
| Shannon entropy | 0.07375 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -10.91 |
| Consensus MFE | -10.73 |
| Energy contribution | -9.97 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17118312 66 + 24543557 AACAAUAUUGUUUUUCACACUAAAUCUUGAGUGACCAUUUGUUAUUUUUUGCGACAGUGUGUUUUG ...............((((((.......(((((((.....)))))))........))))))..... ( -10.26, z-score = -0.53, R) >droYak2.chr3L 7237408 66 - 24197627 AACAAUAUUGUUUUUCACACUAAAUCUCGAAUGGCCAUUUGUUAUUUUUCGCGACAGUGUGUUCUG ...............((((((...((.((((((((.....)))))...))).)).))))))..... ( -10.60, z-score = -0.91, R) >droSec1.super_0 9169178 66 + 21120651 AACAAUAUUGUUUUUCACACUAAAUCUCGAGUGACCAUUUGUUAUUUUUCGCGACAGUGUGUUUUG ...............((((((...((.((((((((.....)))))...))).)).))))))..... ( -11.40, z-score = -1.06, R) >droSim1.chr3L 16453780 66 + 22553184 AACAAUAUUGCUUUUCACACUAAAUCUCGAGUGACCAUUUGUUAUUUUUCGCGACAGUGUGUUUUG ...............((((((...((.((((((((.....)))))...))).)).))))))..... ( -11.40, z-score = -1.11, R) >consensus AACAAUAUUGUUUUUCACACUAAAUCUCGAGUGACCAUUUGUUAUUUUUCGCGACAGUGUGUUUUG ...............((((((...((.((((((((.....)))))...))).)).))))))..... (-10.73 = -9.97 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:54 2011