| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,099,515 – 17,099,606 |
| Length | 91 |
| Max. P | 0.691206 |
| Location | 17,099,515 – 17,099,606 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 86.44 |
| Shannon entropy | 0.25434 |
| G+C content | 0.48779 |
| Mean single sequence MFE | -28.44 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.43 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17099515 91 + 24543557 CAGUCGCAUCUGUGUGCGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAGCAGAGUGUAGUAAC-------AGUGA-AGCCAGCAGUUCCCGUCUC ..(((((((....)))))))((-(..........((((((((((..((((........))))..))))-------)))))-))))............... ( -27.10, z-score = -2.10, R) >droSim1.chr3L 16432881 91 + 22553184 CAGUCGCAUCUGUGUGCGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAGCAGAGUGUAGUAAC-------AGUGA-AGCCAGCAGUUCCCGUCUC ..(((((((....)))))))((-(..........((((((((((..((((........))))..))))-------)))))-))))............... ( -27.10, z-score = -2.10, R) >droSec1.super_0 9150292 91 + 21120651 CAGUCGCAUCUGUGUGCGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAUCAGAGUGUAGUAAC-------AGUGA-AGCCAGCAGUUCCCGUCUC ..(((((((....)))))))((-(..........((((((((((..((((........))))..))))-------)))))-))))............... ( -27.10, z-score = -2.61, R) >droYak2.chr3L 7217613 91 - 24197627 CAGUCGCAUCUGUGUGCGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAGCAGAGUGUAGUAAC-------AGUGA-AGCCAGCAGUUCCCGUCUC ..(((((((....)))))))((-(..........((((((((((..((((........))))..))))-------)))))-))))............... ( -27.10, z-score = -2.10, R) >droEre2.scaffold_4784 9009489 91 - 25762168 UAGUCGCAUCUGUGUGCGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAGCAGAGUGUAGUAAC-------AGUGA-AGCCAGCAGUUCCCGUCUC ..(((((((....)))))))((-(..........((((((((((..((((........))))..))))-------)))))-))))............... ( -27.10, z-score = -2.17, R) >droAna3.scaffold_13337 7223311 94 + 23293914 -----GCAUCUGUGUGUGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAGCAGAGUGUAGUAACGUAACACAGUGGCAGCCAGAAGUCCCCGUCCC -----((..(((((((((((((-(((((((....))))))))))))))((((.((........)).)))).))))))..))................... ( -31.10, z-score = -2.82, R) >dp4.chrXR_group6 13224701 86 + 13314419 CCGGCGCAUCUGUGUGCGGCGG-CAAUAAAAACUUUUAUUGUUGUCACACGUAGCACACUGUAGCGCA-----ACAGUGA-AGCCAACAGUCC------- ..(((....(((((((.(((((-(((((((....)))))))))))).)))))))..((((((......-----)))))).-.)))........------- ( -32.10, z-score = -2.75, R) >droPer1.super_9840 219 87 + 1143 CCGGCGCAUCUGUGUGCGGCGGACAAUAAAAACUUUUAUUGUUGUCACACGUAGCACACUGUAGCGCA-----ACAGUGA-AGCCAACAGUCC------- ..(((....(((((((.((((.((((((((....)))))))))))).)))))))..((((((......-----)))))).-.)))........------- ( -28.80, z-score = -1.79, R) >consensus CAGUCGCAUCUGUGUGCGGCGG_CAAUAAAAACUUUUAUUGUUGUCACACGUAGCAGAGUGUAGUAAC_______AGUGA_AGCCAGCAGUUCCCGUCUC .....(((((((((((.(((((.(((((((....)))))))))))).)))...))))).)))...................................... (-17.05 = -17.43 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:51 2011