| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,088,009 – 17,088,064 |
| Length | 55 |
| Max. P | 0.874032 |
| Location | 17,088,009 – 17,088,064 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 92.17 |
| Shannon entropy | 0.13899 |
| G+C content | 0.50805 |
| Mean single sequence MFE | -18.77 |
| Consensus MFE | -14.80 |
| Energy contribution | -16.04 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17088009 55 + 24543557 CAUCGCUGGAAAACUCUGCAGCUUCUGAGGCUGCACGGGAAAAAAGGCGAUUUUU .((((((......((((((((((.....))))))).)))......)))))).... ( -21.10, z-score = -3.47, R) >droSim1.chr3L 16422127 55 + 22553184 CAUCGCUGGAAAACUCUGCAGCUUCUGAGGCUGCACGGCAAAAAAGGCGAUUUUU .((((((......((.(((((((.....))))))).)).......)))))).... ( -19.02, z-score = -2.46, R) >droSec1.super_0 9139052 55 + 21120651 CAUCGCUGGAAAACUCUGCAGCUUCUGAGGCUGCACGGGAAAAAAGGCGAUUUUU .((((((......((((((((((.....))))))).)))......)))))).... ( -21.10, z-score = -3.47, R) >droYak2.chr3L 7205529 54 - 24197627 CACCGCUGGAAAACUCUGCAGCUUCUGAGGCUGCACGGGAAAAAAG-CGAGUUUU .((((((......((((((((((.....))))))).))).....))-)).))... ( -18.90, z-score = -2.09, R) >droEre2.scaffold_4784 8998185 51 - 25762168 CACCGCCGGAAAACUCUGCAGCUUCUGGGGCUGCACGGGAAAAAAG----CUUUU ....((.......((.(((((((.....))))))).)).......)----).... ( -13.74, z-score = -0.20, R) >consensus CAUCGCUGGAAAACUCUGCAGCUUCUGAGGCUGCACGGGAAAAAAGGCGAUUUUU ..(((((......((((((((((.....))))))).)))......)))))..... (-14.80 = -16.04 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:50 2011