| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,087,843 – 17,087,939 |
| Length | 96 |
| Max. P | 0.708914 |
| Location | 17,087,843 – 17,087,939 |
|---|---|
| Length | 96 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.77 |
| Shannon entropy | 0.32351 |
| G+C content | 0.44447 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -17.13 |
| Energy contribution | -17.61 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17087843 96 + 24543557 ----UCUCCUGCC-UGACUGCCUGCUUAUGGGCCAUUGAUUAAGCUUAAUCAAUGCGCUUAAGGCAACUCG-------CAACUCCUGUGCACUGUAAUUAAAA-UGCAG-------- ----....((((.-....(((((.....((((((((((((((....))))))))).))))))))))....(-------((.(....)))).............-.))))-------- ( -25.80, z-score = -1.94, R) >droAna3.scaffold_13337 7211376 96 + 23293914 ----CCUCUUGCC-UGACUGCCUGCUUAUGGGCCAUUGAUUAAACUUAAUCAAUACGCUUAAGGCAACUCU-------CAACUCCUGUGCACUGUAAUUAAAA-UGCAG-------- ----....(((((-(....((((......)))).((((((((....)))))))).......))))))....-------.............(((((.......-)))))-------- ( -20.30, z-score = -1.92, R) >droEre2.scaffold_4784 8998012 96 - 25762168 ----UCUCCUGCC-UGACUGCCUGCUUAUGGGCCAUUGAUUAAGCUUAAUCAAUGCGCUUAAGGCAACUCG-------CAACUCCUGUGCACUGUAAUUAAAA-UGCAG-------- ----....((((.-....(((((.....((((((((((((((....))))))))).))))))))))....(-------((.(....)))).............-.))))-------- ( -25.80, z-score = -1.94, R) >droYak2.chr3L 7205357 96 - 24197627 ----UCUCCUGCC-UGACUGCCUGCUUAUGGGCCAUUGAUUAAGCUUAAUCAAUGCGCUUAAGGCAACUCG-------CAACUCCUGUGCACUGUAAUUAAAA-UGCAG-------- ----....((((.-....(((((.....((((((((((((((....))))))))).))))))))))....(-------((.(....)))).............-.))))-------- ( -25.80, z-score = -1.94, R) >droSec1.super_0 9138886 96 + 21120651 ----UCUCCUGCC-UGACUGCCUGCUUAUGGGCCAUUGAUUAAGCUUAAUCAAUGCGCUUAAGGCAACUCG-------CAACUCCUGUGCACUGUAAUUAAAA-UGCAG-------- ----....((((.-....(((((.....((((((((((((((....))))))))).))))))))))....(-------((.(....)))).............-.))))-------- ( -25.80, z-score = -1.94, R) >droSim1.chr3L 16421961 96 + 22553184 ----UCUCCUGCC-UGACUGCCUGCUUAUGGGCCAUUGAUUAAGCUUAAUCAAUGCGCUUAAGGCAACUCG-------CAACUCCUGUGCACUGUAAUUAAAA-UGCAG-------- ----....((((.-....(((((.....((((((((((((((....))))))))).))))))))))....(-------((.(....)))).............-.))))-------- ( -25.80, z-score = -1.94, R) >droMoj3.scaffold_6680 21339418 85 - 24764193 ----GAUCCUGUU----CGCGCUGCUUAUGG-CCAUUGAUUAAGUUUAAUCAAUGAGCUUAAGGCAA--------------CUUCUGUGCAUUGUAAUUAAAG-UGCAG-------- ----.........----.(((((.((((.((-((((((((((....))))))))).)))))))(((.--------------(....))))...........))-)))..-------- ( -23.50, z-score = -1.85, R) >droVir3.scaffold_13049 20203464 89 - 25233164 ----GAUCUUGUU----C----UGCUUAUGG-CCAUUGAUUAAGUUUAAUCAAUGGGCUAAAGGCAA--------------CUUCUGUGCAUUGUAAUUAAAG-UGCAGCCGCUGCG ----.........----.----(((((.(((-((((((((((....)))))))).))))).))))).--------------......((((((........))-))))((....)). ( -25.90, z-score = -1.83, R) >dp4.chrXR_group6 13211357 104 + 13314419 ----UGUCCUGCCAUUUCUGCCUGCUUAUGGGCCAUUGAUUAAGUUUAAUCAAUGCGCUUACGGCAACUCUUGCAACGCAACUCCUGUGCACAGUAAUUAAAA-UGCAG-------- ----....((((.((((.(((.(((...((((((((((((((....))))))))).))))).(....)....)))..)))....(((....)))......)))-)))))-------- ( -25.00, z-score = -0.74, R) >droPer1.super_401 5513 109 + 18708 GGCCUGUCCCGCCAUUUCUGCCGGCUUAUGGGCCAUUGAUUAAGUUUAAUCAAUGCGCUUACGGCAACUCUUUCAACGCAACUCCUGUGCACAGUAAUUAAAAAUGCAG-------- (((.......))).....(((((.....((((((((((((((....))))))))).))))))))))...........(((.(....))))...(((........)))..-------- ( -26.00, z-score = -0.56, R) >consensus ____UCUCCUGCC_UGACUGCCUGCUUAUGGGCCAUUGAUUAAGCUUAAUCAAUGCGCUUAAGGCAACUCG_______CAACUCCUGUGCACUGUAAUUAAAA_UGCAG________ ........((((..........(((((.((((((((((((((....))))))))).)))))))))).....................(((...))).........))))........ (-17.13 = -17.61 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:49 2011