| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,065,907 – 17,066,014 |
| Length | 107 |
| Max. P | 0.887750 |
| Location | 17,065,907 – 17,066,014 |
|---|---|
| Length | 107 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.49074 |
| G+C content | 0.71515 |
| Mean single sequence MFE | -57.21 |
| Consensus MFE | -16.63 |
| Energy contribution | -15.57 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17065907 107 - 24543557 ---UACCGCUUGUAGCGCUACCCCGGGCCGCAGCAGAGGUGCGACCGCUGGCGCCGCCUCUGGUGUUGCGGCGACAGGUGUCGCCCCCUCCGGUGGCGCCCCAAGCCACG ---....(((((..((((((((..((((.(((.((((((((((.((...)))).)))))))).))).))((((((....)))))).))...))))))))..))))).... ( -61.10, z-score = -3.39, R) >droEre2.scaffold_4784 8985602 107 + 25762168 ---UACCGCUUGUAGCGCUACCCCGGGCCGCAGCAGAGGUGGCCCCGCUGGCGCCGCCUCUGGUGUUGCGGCGACAGGUGUCGCCCCCUCCGGUGGCGCCCCAAGCCACG ---....(((((..((((((((..((((.(((.((((((((((((....)).)))))))))).))).))((((((....)))))).))...))))))))..))))).... ( -66.60, z-score = -4.69, R) >droYak2.chr3L 7192572 107 + 24197627 ---UACCGCUUGUAGCGCUACCCCGGGCCGCAGCAGAGGUGGCCCCGCUGGCGCCGCCUCUGGUGUUGCGGCGACAGGUGUCGCCCCCUCCGGUGGCGCCCCAAGCCACG ---....(((((..((((((((..((((.(((.((((((((((((....)).)))))))))).))).))((((((....)))))).))...))))))))..))))).... ( -66.60, z-score = -4.69, R) >droSec1.super_0 9126154 107 - 21120651 ---UACCGCUUGUAGCGCUACCCCGGGCCGCAGCAGAGGUGCCCCCGCUGGCGCCGCCUCUGGUGUUGCGGCGACAGGUGUCGCCCCCUCCGGUGGCGUCCCAAGCCACG ---....(((((..((((((((..((((.(((.(((((((((((.....)).).)))))))).))).))((((((....)))))).))...))))))))..))))).... ( -58.20, z-score = -3.09, R) >droSim1.chr3L 16408891 107 - 22553184 ---UACCGCUUGUAGCGCUACCCCGGGCCGCAGCAGAGGUGCCCCCGCUGGCGCCGCCUCUGGUGUUGCGGCGACAGGUGUCGCCCCCUCCGGUGGCGUCCCAAGCCACG ---....(((((..((((((((..((((.(((.(((((((((((.....)).).)))))))).))).))((((((....)))))).))...))))))))..))))).... ( -58.20, z-score = -3.09, R) >droVir3.scaffold_13049 20190067 92 + 25233164 ---UACCACAUGUAGCACGAAUGCGGGCCGCAGCAGAGCUG---CCACUGGCCCCGC---UGGCGG---------UGGUGCGGCUGCUGCAGCCGCUGUCCACAAUCAGC ---...........(((....)))((((((((((...))))---)....))))).((---(((..(---------(((.(((((((...)))))))...))))..))))) ( -43.90, z-score = -0.84, R) >droMoj3.scaffold_6680 21325734 101 + 24764193 ---UACCACAUGUAGCACGAAUCCGGGCCGCAGCAGAGCCG---CCAAUUGCACCGC---UGGCGGCGGUGCAGCAGCGGCUGCCGCUGCCGCUGCCGUGCACAAUCAGC ---.......(((.(((((......(((.((......)).)---))...((((((((---.....))))))))((((((((.......))))))))))))))))...... ( -50.00, z-score = -1.58, R) >droGri2.scaffold_15110 9908418 104 - 24565398 UACCACAACGUGUAGCACGAAUGCCGGCCGCAGCAGAGCCG---CCACCGGCCCCGC---UGGUGGUGGUGUUGCUGGUGCUGCUGCUGCAGCGGCUGUCCACAAUCAGA .........(((..(((....)))(((((.((((((.((((---((((((((...))---)))))))))).))))))..(((((....))))))))))..)))....... ( -53.10, z-score = -2.18, R) >consensus ___UACCGCUUGUAGCGCUACCCCGGGCCGCAGCAGAGGUG_CCCCGCUGGCGCCGCCUCUGGUGUUGCGGCGACAGGUGUCGCCCCCUCCGGUGGCGUCCCAAGCCACG .......................(((((((..................)))).))).....((((((...(((((....))))).((....)).)))))).......... (-16.63 = -15.57 + -1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:45 2011