| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,062,539 – 17,062,594 |
| Length | 55 |
| Max. P | 0.817155 |
| Location | 17,062,539 – 17,062,594 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Shannon entropy | 0.29501 |
| G+C content | 0.39207 |
| Mean single sequence MFE | -12.95 |
| Consensus MFE | -9.77 |
| Energy contribution | -9.15 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17062539 55 + 24543557 CAAUAGCAAUCGCAAUCGCAAUGGCGGCAACGGUUGCCUUUGUAAAUAAAUAACU (((..(((((((...((((....))))...)))))))..)))............. ( -14.90, z-score = -2.28, R) >droSec1.super_0 9122774 55 + 21120651 CAAUAGCAAUCGCAAUCGCAAUGGCGGCAACGGUUGCCUUUGUAAAUAAAUAACU (((..(((((((...((((....))))...)))))))..)))............. ( -14.90, z-score = -2.28, R) >droSim1.chr3L 16404959 55 + 22553184 CAAUAGCAAUCGCAAUCGCAAUGGCGGCAACGGUUGCCUUUGUAAAUAAAUAACU (((..(((((((...((((....))))...)))))))..)))............. ( -14.90, z-score = -2.28, R) >droMoj3.scaffold_6680 21322063 51 - 24764193 ---UGGCUAUAGAGAUAGAAAUAGCGGUAACUGCC-UUUUUCUAAAUAAAUAAGU ---............((((((..((((...)))).-..))))))........... ( -7.10, z-score = -0.11, R) >consensus CAAUAGCAAUCGCAAUCGCAAUGGCGGCAACGGUUGCCUUUGUAAAUAAAUAACU .................((((.((((((....)))))).))))............ ( -9.77 = -9.15 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:44 2011