| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,062,400 – 17,062,505 |
| Length | 105 |
| Max. P | 0.682374 |
| Location | 17,062,400 – 17,062,505 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.33394 |
| G+C content | 0.48186 |
| Mean single sequence MFE | -30.95 |
| Consensus MFE | -17.81 |
| Energy contribution | -20.03 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17062400 105 - 24543557 AUGUCGGUCCGUAUAAGCAUCCGGGGUUUUUCGGGCGCUUCUUUGUAUCAUAGUGGGUCCCAGACUCAACACUAAUGAAAACAACAUGGCGCACCGAGAUUUCGC ...((((...((....))..))))((..(((((((((((...((((.((((((((((((...))))...)))).))))..))))...))))).))))))..)).. ( -32.30, z-score = -1.76, R) >droAna3.scaffold_13337 7195057 87 - 23293914 AUUUCGGUCCGAGUACGGAUACGGG--UCCGGAUCCGCUUCUUUGUAU----------------CUCAACUCUAAUGAAAACAACAUGGCGCACCGAGAUUUCGC (((((((((((((((((((..((((--(....)))))..)))..))).----------------)))...((....)).........))...))))))))..... ( -21.80, z-score = -0.28, R) >droEre2.scaffold_4784 8982101 105 + 25762168 AUGUCGGUCCGUAUGGGUAUCCGGGGUUUUUCGGGCGCUUCUUUGUAUUAUAGUGAGUUCCAGACUCAACUCUAAUGAAAACAACAUGGCGCACCGAGAUUUCGC ...((((.((.....))...))))((..(((((((((((...((((((((.((((((((...))))).))).))))....))))...))))).))))))..)).. ( -33.00, z-score = -1.99, R) >droYak2.chr3L 7188940 93 + 24197627 ------------AUGGGGAUCCGGGGUUUUUCGGGCGCUUCUUUGUAUUAUAGUGAGUCCCAGACUCAACACUAAUGAAAACAACAUGGCGCACCGAGAUUUUGC ------------..((....))(.((..(((((((((((...((((.((.(((((((((...)))))...))))...)).))))...))))).))))))..)).) ( -26.60, z-score = -1.35, R) >droSec1.super_0 9122635 105 - 21120651 AUGUCGGUCCGUAUAAGGAUCCGGUGUUUUUCGGGCGCUUCUUUUUAUCAUAGUGAGUCCCAGACUCAACACUAAUGAAAACAACAUGGCGCACCGAGAUUUCGC ....((((((......))).)))(((..(((((((((((..(((((((.....((((((...))))))......)))))))......))))).))))))...))) ( -34.30, z-score = -3.07, R) >droSim1.chr3L 16404820 105 - 22553184 AUGUCGGUCCGUAUAAGGAUCCGGGGUUUUUCGGGCGCUUCUUUGUAUCAUAGUGAGUCCCAGACUCAACACUAAUGAAAACAACAUGGCGCACCGAGAUUUCGC ...(((((((......))).))))((..(((((((((((...((((.((((((((((((...)))))...))).))))..))))...))))).))))))..)).. ( -37.70, z-score = -3.46, R) >consensus AUGUCGGUCCGUAUAAGGAUCCGGGGUUUUUCGGGCGCUUCUUUGUAUCAUAGUGAGUCCCAGACUCAACACUAAUGAAAACAACAUGGCGCACCGAGAUUUCGC .....................(((((((..(((((((((...((((.((((..((((((...))))))......))))..))))...))))).))))))))))). (-17.81 = -20.03 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:43 2011