Locus 7745

Sequence ID dm3.chr3L
Location 17,052,767 – 17,052,859
Length 92
Max. P 0.904332
window10657 window10658

overview

Window 7

Location 17,052,767 – 17,052,859
Length 92
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 90.88
Shannon entropy 0.14002
G+C content 0.32962
Mean single sequence MFE -20.70
Consensus MFE -15.45
Energy contribution -15.45
Covariance contribution 0.00
Combinations/Pair 1.18
Mean z-score -2.01
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.08
SVM RNA-class probability 0.535373
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17052767 92 + 24543557
UAUAUAUAUGUAUAUAUCAAUUUGGGUUUUAUUUUCUCAUAUAUACGGGCUUAUUUGCUGUCCUCAGAAGGGUUCUUCGGCCUUUUUGGGAU---
........((((((((......((((.........))))))))))))(((......)))((((.(((((((((......)))))))))))))--- ( -23.30, z-score =  -2.57, R)
>droSec1.super_0 9113164 92 + 21120651
UAUAUAUAUGUAUAUAUCAAUUUGGGUUUUAUUUUCUCAUAUAUACGGGCUUAUUUGCUGUCCUCAGAAGGAUUCUUCGGUCUUUUUGGGAU---
........((((((((......((((.........))))))))))))(((......)))((((.(((((((((......)))))))))))))--- ( -21.30, z-score =  -2.39, R)
>droYak2.chr3L 7178477 93 - 24197627
UAUAUAUAUGUAUAUAUCAUUUUGGGGUUUAU--UCUCAUAUAUACGGGCUUAUUUGCUGUCCUCAGAAAUGUUCUUCGGUCUUUUGGGGGUUCU
........((((((((......(((((.....--)))))))))))))(((......))).(((((((((.....(....)..))))))))).... ( -19.40, z-score =  -1.49, R)
>droEre2.scaffold_4784 8972654 90 - 25762168
UAUAUAUAUGUAUAUAUCAUUUUUGGGUUUAU--UCUCAUAUAUACGGGUUUAUUUGCUGUCCUCAGAAAGGUUCUUCGGUCUUUUGGGGAU---
..((((((((.(((..(((....)))...)))--...))))))))..(((......)))((((((((((.((..(....)))))))))))))--- ( -18.80, z-score =  -1.61, R)
>consensus
UAUAUAUAUGUAUAUAUCAAUUUGGGGUUUAU__UCUCAUAUAUACGGGCUUAUUUGCUGUCCUCAGAAAGGUUCUUCGGUCUUUUGGGGAU___
........((((((((......((((.........))))))))))))(((......)))((((.(((((((((......)))))))))))))... (-15.45 = -15.45 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 17,052,767 – 17,052,859
Length 92
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 90.88
Shannon entropy 0.14002
G+C content 0.32962
Mean single sequence MFE -10.34
Consensus MFE -9.20
Energy contribution -9.21
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.17
SVM RNA-class probability 0.904332
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 17052767 92 - 24543557
---AUCCCAAAAAGGCCGAAGAACCCUUCUGAGGACAGCAAAUAAGCCCGUAUAUAUGAGAAAAUAAAACCCAAAUUGAUAUAUACAUAUAUAUA
---..........((((..(((.....)))..))...((......))))((((((((.((...............)).))))))))......... ( -10.86, z-score =  -1.15, R)
>droSec1.super_0 9113164 92 - 21120651
---AUCCCAAAAAGACCGAAGAAUCCUUCUGAGGACAGCAAAUAAGCCCGUAUAUAUGAGAAAAUAAAACCCAAAUUGAUAUAUACAUAUAUAUA
---............((..(((.....)))..))...((......))..((((((((.((...............)).))))))))......... (  -9.86, z-score =  -1.46, R)
>droYak2.chr3L 7178477 93 + 24197627
AGAACCCCCAAAAGACCGAAGAACAUUUCUGAGGACAGCAAAUAAGCCCGUAUAUAUGAGA--AUAAACCCCAAAAUGAUAUAUACAUAUAUAUA
...............((..(((.....)))..))...((......))..((((((((.(..--.............).))))))))......... ( -10.56, z-score =  -2.82, R)
>droEre2.scaffold_4784 8972654 90 + 25762168
---AUCCCCAAAAGACCGAAGAACCUUUCUGAGGACAGCAAAUAAACCCGUAUAUAUGAGA--AUAAACCCAAAAAUGAUAUAUACAUAUAUAUA
---............((..(((.....)))..))...............((((((((.(..--.............).))))))))......... ( -10.06, z-score =  -2.27, R)
>consensus
___AUCCCAAAAAGACCGAAGAACCCUUCUGAGGACAGCAAAUAAGCCCGUAUAUAUGAGA__AUAAAACCCAAAAUGAUAUAUACAUAUAUAUA
...............((..(((.....)))..))...............((((((((.(.................).))))))))......... ( -9.20 =  -9.21 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:40 2011