| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,047,201 – 17,047,298 |
| Length | 97 |
| Max. P | 0.535624 |
| Location | 17,047,201 – 17,047,298 |
|---|---|
| Length | 97 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.54732 |
| G+C content | 0.46580 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -14.68 |
| Energy contribution | -14.94 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17047201 97 + 24543557 GCCAAGUUUUAUUUGGUUGCU-GGCCAAGUGCCAGGGCCACGCU---GCAGUUCU-----UGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCA-AUAUGGGGAUUG--------- .((......((((((((....-.))))))))(((.((((((...---((((((..-----.))))))(((....)))..........)))))).-...)))))....--------- ( -35.70, z-score = -1.50, R) >droGri2.scaffold_15110 9888665 111 + 24565398 GCCAAGUUUAAUUUGUUUUUUUGGCAAGUUGCCCGCAUCAUUAUUAUGCAGGUCU-----UGCCUGUGACGCAACUUACCAAUUAAUUCGACCAUAUGCAUGCGGUAUACUCAUUA ((((((.............)))))).(((...((((((.........(((((...-----..)))))...(((.......................)))))))))...)))..... ( -23.52, z-score = -0.35, R) >droVir3.scaffold_13049 20155547 97 - 25233164 GCCAAGUUUAAUUUGGUUAUU-GGCAAUUUGCCCACAUCAUUAU---GCAGUUCU-----UGACUGUGACGCAAGUUGCCAAUUAAACUGACCA-AUAUACAAAUUA--------- .....((.....(((((((((-((((((((((.(((((((....---........-----))).))))..)))))))))))))......)))))-)...))......--------- ( -27.80, z-score = -3.58, R) >droWil1.scaffold_180916 2293634 87 + 2700594 ----AGGGGCAUUCGGUUGCC-AAUUAAAAACCAAAAAAACUA------AACU---------AAAACAAAAAAAAAAGGGAAAGAAGAAUGUUGUAUUUAGUUAUUG--------- ----...((((......))))-.....................------((((---------(((((((......................)))).)))))))....--------- ( -10.25, z-score = 0.17, R) >dp4.chrXR_group6 13178107 102 + 13314419 GCCAAGUUUUAUUUAGUUGUU-GGCCGCCUGCCAGGGCCGUGCU---GCAGUUCUGUUCUUGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCC-AUAUGAAGAUUG--------- ((((.......((((((((((-(((.((((....)))).(((..---((((((........))))))..)))..))))))))))))).))))..-............--------- ( -33.30, z-score = -1.48, R) >droAna3.scaffold_13337 7178714 97 + 23293914 GCCAAGUUUUAUUUAGUUUCU-GGCCGGCUGCCAGGGCCACGCU---GCAGUUCU-----UGACUGUGACGCAAGUCGGCAAUUAAAGUAGCCA-AUAUGGGAAUUG--------- .............((((((((-(...((((((....(((.....---((((((..-----.))))))(((....)))))).......)))))).-...)))))))))--------- ( -29.60, z-score = -0.54, R) >droEre2.scaffold_4784 8966554 97 - 25762168 GCCAAGUUUUAUUUGGUUGCU-GGCCAACUGCCAGGGCCACGCU---GCAGCUCU-----UGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCA-AUAUGGGGAUUG--------- (((((((...)))))))..((-(((.....)))))((((((((.---...))..(-----(((.((((((....))).))).)))).)))))).-............--------- ( -34.40, z-score = -0.92, R) >droYak2.chr3L 7171443 97 - 24197627 GCCAAGUUUUAUUUGGUUGCU-GGCCAACUGCCAGGGCCACGCU---GCAGCUCU-----UGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCA-AUAUGGGGAUUG--------- (((((((...)))))))..((-(((.....)))))((((((((.---...))..(-----(((.((((((....))).))).)))).)))))).-............--------- ( -34.40, z-score = -0.92, R) >droSec1.super_0 9107578 97 + 21120651 GCCAAGUUUUGUUUGGUUGCU-GGCCAAGUGCCAGGGCCACGCU---GCAGUUCU-----UGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCA-AUAUGGGGAUUG--------- ((((((.....))))))..((-(((.....)))))((((((...---((((((..-----.))))))(((....)))..........)))))).-............--------- ( -35.00, z-score = -1.01, R) >droSim1.chr3L 16388252 97 + 22553184 GCCAAGUUUUGUUUGGUUGCU-GGCCAAGUGCCAGGGCCACGCU---GCAGUUCU-----UGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCA-AUAUGGGGAUUG--------- ((((((.....))))))..((-(((.....)))))((((((...---((((((..-----.))))))(((....)))..........)))))).-............--------- ( -35.00, z-score = -1.01, R) >consensus GCCAAGUUUUAUUUGGUUGCU_GGCCAACUGCCAGGGCCACGCU___GCAGUUCU_____UGACUGUGACGCAAGUCGGCAAUUAAAGUGGCCA_AUAUGGGGAUUG_________ ....((((((............(((.....)))..((((........((((((........))))))(((....)))............)))).......)))))).......... (-14.68 = -14.94 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:38 2011