| Sequence ID | dm3.chr3L |
|---|---|
| Location | 17,038,678 – 17,038,749 |
| Length | 71 |
| Max. P | 0.904780 |
| Location | 17,038,678 – 17,038,749 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 86.72 |
| Shannon entropy | 0.22937 |
| G+C content | 0.54962 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -17.90 |
| Energy contribution | -18.94 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 17038678 71 + 24543557 UUCAUGGAUGUGGGCAGAACAUUCCUCACUGCCGCUGCCCACGUUUCGCUCUCCGGCGACAAACGGAAUGG ..(((((((((((((((..((........))...)))))))))))).....((((........))))))). ( -24.30, z-score = -1.80, R) >droSim1.chr3L 16379756 71 + 22553184 UUCAUGAAUGUGGGCAGAACAUUCCUCACUGUCGCUGCCCACGUUCAGCCCUCCGUCGACAAACGGAAUGG ....(((((((((((((.(((........)))..))))))))))))).((.(((((......)))))..)) ( -29.50, z-score = -4.40, R) >droSec1.super_0 9099168 71 + 21120651 UUCAUGAAUGUGGGCAGAACAUUCCUCACUGUCGCUGCCCACGUUCCGCCCUCCAGCGACAAACGGAAUGG (((..((((((((((((.(((........)))..))))))))))))(((......)))......))).... ( -25.30, z-score = -2.93, R) >droYak2.chr3L 7162866 69 - 24197627 UUUGUGAAUGAGGGCAGAACAUUCCUUGCUGUCGCUGCCCACGUUCAGCUCUCCUACGACAAACUGGAU-- ....((((((.((((((.(((........)))..)))))).))))))....(((...........))).-- ( -20.40, z-score = -1.76, R) >droEre2.scaffold_4784 8958175 69 - 25762168 UUCAUGAAUGAGGGCAGAACAUUCCUUACCGUCGCAGCCCACGUUCCGCUCUCCGGCGACAAACUGGAU-- .....(((((.((((.((.............))...)))).))))).....(((((.......))))).-- ( -15.42, z-score = 0.28, R) >consensus UUCAUGAAUGUGGGCAGAACAUUCCUCACUGUCGCUGCCCACGUUCCGCUCUCCGGCGACAAACGGAAUGG .....((((((((((((..((........))...)))))))))))).....((((........)))).... (-17.90 = -18.94 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:32:36 2011